Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a23
         (810 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058527-1|AAL13756.1|  499|Drosophila melanogaster LD23445p pro...   324   9e-89
AE014297-48|AAF52149.2|  758|Drosophila melanogaster CG9791-PA, ...   304   8e-83
AE014135-95|AAF59336.2|  468|Drosophila melanogaster CG1970-PA p...    29   5.7  

>AY058527-1|AAL13756.1|  499|Drosophila melanogaster LD23445p
           protein.
          Length = 499

 Score =  324 bits (796), Expect = 9e-89
 Identities = 150/237 (63%), Positives = 188/237 (79%)
 Frame = -1

Query: 804 PEPVTQAGLHPTSEQMELYAYHXPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEM 625
           PEP+ QAGLHPT++Q+ELYAYH P ++LS+LMDIFV+LCTVDDSLYFMCN E FKFLAEM
Sbjct: 225 PEPIKQAGLHPTADQIELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEM 284

Query: 624 IQHVPLPLRARYVFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPR 445
           IQHV LPLRARYVFCCAPIN K+PFVC+ FLK+ RQYSRNEPIT +++     WP   P+
Sbjct: 285 IQHVALPLRARYVFCCAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNCGWPFKLPK 344

Query: 444 TILDLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLRNS 265
           TILDLVHLE+VFDV++LYLWLSYRF D+FP+   VRD + ELD IIQQG+FQITRLL+N+
Sbjct: 345 TILDLVHLEAVFDVMDLYLWLSYRFMDLFPEAAYVRDAQKELDEIIQQGVFQITRLLKNT 404

Query: 264 EQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLVARGLITPQMLKKLQQE 94
           E     E S +AI    +R+  +   +     +G+L+E L+A+GL+TP ML +L++E
Sbjct: 405 EASQDGETSNYAI----RRITHVKEPRLPSLSRGRLTERLLAQGLLTPGMLSELRKE 457


>AE014297-48|AAF52149.2|  758|Drosophila melanogaster CG9791-PA,
            isoform A protein.
          Length = 758

 Score =  304 bits (747), Expect = 8e-83
 Identities = 145/237 (61%), Positives = 183/237 (77%)
 Frame = -1

Query: 804  PEPVTQAGLHPTSEQMELYAYHXPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEM 625
            PEP+ QAGLHPT++Q+ELYAYH P ++LS+LMDIFV+LCTVDDSLYFMCN E FKFLAEM
Sbjct: 489  PEPIKQAGLHPTADQIELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEM 548

Query: 624  IQHVPLPLRARYVFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPR 445
            IQHV LPLRARYVFCCAPIN K+PFVC+ FLK+ RQYSRNEPIT +++     WP   P+
Sbjct: 549  IQHVALPLRARYVFCCAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNCGWPFKLPK 608

Query: 444  TILDLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLRNS 265
            TILDLVHLE+VFDV++L     YRF D+FP+   VRD + ELD IIQQG+FQITRLL+N+
Sbjct: 609  TILDLVHLEAVFDVMDL-----YRFMDLFPEAAYVRDAQKELDEIIQQGVFQITRLLKNT 663

Query: 264  EQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLVARGLITPQMLKKLQQE 94
            E     E S +AI    +R+  +   +     +G+L+E L+A+GL+TP ML +L++E
Sbjct: 664  EASQDGETSNYAI----RRITHVKEPRLPSLSRGRLTERLLAQGLLTPGMLSELRKE 716


>AE014135-95|AAF59336.2|  468|Drosophila melanogaster CG1970-PA
           protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 678 DSLYFMCNTEGFKFLAEMIQHVPLPLRARYV 586
           D +  MCN + +    E + ++ +PLRA+Y+
Sbjct: 145 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYI 175


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,244,396
Number of Sequences: 53049
Number of extensions: 799431
Number of successful extensions: 2278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2273
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)