Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a23
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...   169   3e-42
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...   169   3e-42
U00043-9|AAC77506.1|  474|Caenorhabditis elegans Temporarily ass...    28   9.1  

>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical protein
            C08F8.2b protein.
          Length = 719

 Score =  169 bits (410), Expect = 3e-42
 Identities = 85/239 (35%), Positives = 137/239 (57%), Gaps = 1/239 (0%)
 Frame = -1

Query: 801  EPVTQAGLHPTSEQMELYAYHXPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMI 622
            EP+   G+ PT +Q+E +++H P A+   L+D+FV +C+V D  +F+C     + LA +I
Sbjct: 481  EPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDH-FFICTVYDMRELAVLI 539

Query: 621  QHVPLPLRARYVFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRT 442
              +PLPL+ RY FC +P+N +     A F+KM R++S  + +T  WL   +EWP P P T
Sbjct: 540  DQIPLPLKVRYTFCTSPLNTEDKRTSAVFVKMARRFSTGQALTYEWLIDMLEWP-PKPAT 598

Query: 441  IL-DLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLRNS 265
             L +L  LE  +++L+ Y+WLS RFPDM PD   VR+    LD++IQ+G+     LL  S
Sbjct: 599  TLNELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFMSLL--S 656

Query: 264  EQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLVARGLITPQMLKKLQQELS 88
                  + +G +     KR N     +    ++  + E L+ R  I+   L++L++EL+
Sbjct: 657  VGATESKAAGSSKSSEGKRENPSKSEREKPNKRSSILEALLKRADISEDDLEQLREELN 715


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical protein
            C08F8.2a protein.
          Length = 721

 Score =  169 bits (410), Expect = 3e-42
 Identities = 85/239 (35%), Positives = 137/239 (57%), Gaps = 1/239 (0%)
 Frame = -1

Query: 801  EPVTQAGLHPTSEQMELYAYHXPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMI 622
            EP+   G+ PT +Q+E +++H P A+   L+D+FV +C+V D  +F+C     + LA +I
Sbjct: 483  EPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDH-FFICTVYDMRELAVLI 541

Query: 621  QHVPLPLRARYVFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRT 442
              +PLPL+ RY FC +P+N +     A F+KM R++S  + +T  WL   +EWP P P T
Sbjct: 542  DQIPLPLKVRYTFCTSPLNTEDKRTSAVFVKMARRFSTGQALTYEWLIDMLEWP-PKPAT 600

Query: 441  IL-DLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLRNS 265
             L +L  LE  +++L+ Y+WLS RFPDM PD   VR+    LD++IQ+G+     LL  S
Sbjct: 601  TLNELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFMSLL--S 658

Query: 264  EQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLVARGLITPQMLKKLQQELS 88
                  + +G +     KR N     +    ++  + E L+ R  I+   L++L++EL+
Sbjct: 659  VGATESKAAGSSKSSEGKRENPSKSEREKPNKRSSILEALLKRADISEDDLEQLREELN 717


>U00043-9|AAC77506.1|  474|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 99 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 732 HATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYV 586
           H T +  +  F  L    D +  MCN + F    E +  + +P RA+Y+
Sbjct: 137 HKTYTQALPYFDRL----DYVSMMCNEQAFSLAIEKLLGIDVPPRAKYI 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,829,667
Number of Sequences: 27780
Number of extensions: 379441
Number of successful extensions: 1079
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)