Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a23
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 484 PVPGDGLVATVLSHHFQEGST 546
           P   D +V   L HH Q G+T
Sbjct: 160 PASADPMVNYTLGHHHQNGAT 180


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +1

Query: 421 QVHEVEYGPRRGQRPLHCAAQPVPGDGLVATVLSHHFQEGS 543
           Q H  +Y P RG  P H       G  +      HH Q  S
Sbjct: 320 QHHPSQYHPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQTQS 360


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/40 (20%), Positives = 19/40 (47%)
 Frame = -1

Query: 501 PITRNWLSGTVEWPLPSPRTILDLVHLESVFDVLELYLWL 382
           P+  NW+   +   L  P+  L++     + D + ++ W+
Sbjct: 504 PLLPNWILENILDMLVLPKLTLEVEEWNPLTDTVPIHTWI 543


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +2

Query: 119 CGVMSPLATSNSDNFPFSSPIDCPTSILLTLLLPW 223
           C +M        DN     P+ CP + ++ L + W
Sbjct: 198 CAIMLGPRLGRYDNGIDPLPLGCPVNAIMGLFVLW 232


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 768 SEQMELYAYHXPHATLSSLMDIFVHLCTVDD 676
           +E   LY    PHAT S   ++  +   V+D
Sbjct: 770 AEHYALYTAMAPHATASEFDEMSFYYSPVED 800


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
 Frame = +2

Query: 158 NFPFSSPIDCPTSILLT-------LLLPWPIAKPLSSSRIICS 265
           N P S    C +++L T        + P+P   PLS S+ +CS
Sbjct: 69  NSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCS 111


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
 Frame = +2

Query: 158 NFPFSSPIDCPTSILLT-------LLLPWPIAKPLSSSRIICS 265
           N P S    C +++L T        + P+P   PLS S+ +CS
Sbjct: 69  NSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCS 111


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 786  AGLHPTSEQMELYAYH 739
            AGLHP +  +  + YH
Sbjct: 1728 AGLHPNNTLLHSFMYH 1743


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 786  AGLHPTSEQMELYAYH 739
            AGLHP +  +  + YH
Sbjct: 1724 AGLHPNNTLLHSFMYH 1739


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,763
Number of Sequences: 438
Number of extensions: 4748
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)