Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a22
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         36   0.036
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    29   5.4  
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356     28   7.2  
07_01_0845 + 6866211-6867143                                           28   7.2  
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281...    28   7.2  
09_04_0262 - 16219281-16219398,16219516-16219573,16219720-162199...    28   9.5  
06_01_1204 + 10397131-10398498                                         28   9.5  
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567...    28   9.5  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 59  HANATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 172
           H NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 125 HQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>08_02_1143 +
           24659105-24659386,24660171-24660272,24661259-24661521,
           24661775-24661874,24662080-24662238,24662327-24663147,
           24663299-24663618,24665831-24667398
          Length = 1204

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 622 GSKAPSCPPRPSHINFEEKAACHRGPL 702
           G ++ +CPP P+H+ + + AA    PL
Sbjct: 23  GWRSATCPPTPTHLTYIDGAASRSWPL 49


>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
          Length = 480

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 589 PHLPYCSKK*TGSKAP--SCPPRPSHINFEEKAACHRGPLVRMMW-KQGSRPSSS 744
           PH P C ++     AP  S PPRPSH      +       VR  + +Q SR +++
Sbjct: 272 PHNPPCQEEKKSGMAPPPSPPPRPSHRRARSMSITGSAKSVRFPFTRQASRSTTT 326


>07_01_0845 + 6866211-6867143
          Length = 310

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 634 PSCPPRPSHINFEEKAACHRGP 699
           P  PP P H +  E AA H GP
Sbjct: 180 PPPPPPPQHAHSAESAAAHAGP 201


>05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,
            2816180-2816292,2818409-2818506,2818636-2818815,
            2818893-2819114,2819270-2819404,2819489-2819771,
            2819858-2819931,2820164-2820384,2820463-2820550,
            2820651-2820744,2820827-2821015,2821369-2821400,
            2821542-2821621,2821718-2821807,2821911-2821980,
            2822240-2822285,2822370-2822428,2822588-2822753,
            2822929-2823107,2823186-2823392,2823529-2823633,
            2823701-2823703
          Length = 1152

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 664  NFEE-KAACHRGPLVRMMWKQGSRPSSSLLPRCEAAPRV 777
            N++E KAA    PL R  W   SR +  L  RCE   R+
Sbjct: 1059 NWDELKAAFRMSPLFRFDWFVKSRTTQELARRCETLIRL 1097


>09_04_0262 -
           16219281-16219398,16219516-16219573,16219720-16219910,
           16220131-16220281,16220368-16220548
          Length = 232

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 613 K*TGSKAPSCPPRPSHINFEEKAACHRGPLVRMMWKQGSRPSSS--LLPRCEAAP 771
           K TG+ A    PRP+H +  +     R  L R + K+  R +++      C AAP
Sbjct: 155 KNTGTAATQSLPRPAHNSLPDLPIARRNSLHRFLEKRKGRMNANAPYQANCTAAP 209


>06_01_1204 + 10397131-10398498
          Length = 455

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 297 IKVWV*FFCYVTEGDLVDASSDVAGRDMLLLRDEAVEDASPS 172
           I VWV  + +  E D V ++ D+AG+    + DE V  A+ S
Sbjct: 378 IGVWVDTWSWEGEDDGVVSAEDIAGKVRSAMADEGVRKAAAS 419


>01_07_0291 +
           42555233-42555444,42556515-42556550,42556652-42556796,
           42556885-42556938,42557130-42557260,42557830-42558056,
           42558670-42558846,42558928-42559076
          Length = 376

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1

Query: 298 ALKLSKI*NPYYRRKRALLHLQRGR 372
           A ++S++  PY RR RA+ HL++GR
Sbjct: 220 AFRMSEVAEPYIRR-RAVRHLEKGR 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,741,917
Number of Sequences: 37544
Number of extensions: 510282
Number of successful extensions: 1426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)