Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a20
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.80 
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.4  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   2.4  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   3.2  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    27   4.3  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   5.6  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   5.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.6  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   7.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   9.9  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   9.9  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.9  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = -2

Query: 445 HNDCYVAVCVLKPGFENGSNQVLSFEYNPIGNKVI--VPFAHEINDT--GLYEYDVLAYV 278
           H   + A+  +     + +N +      P  N +I  V      N+T  GL+++ + A+ 
Sbjct: 441 HRGNWAAIATMSLQLPSTANSISFLSSPPNNNDIIDKVICVSYANNTILGLFDFGLCAFT 500

Query: 277 DSVEFDGKQFEEFVQKLILPSSFNDSEKVL 188
             +EF  ++ +  +Q+L+   +FN+S  ++
Sbjct: 501 QEIEFSNEKEKSPIQQLL---TFNNSNMIV 527


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 655 FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKS 539
           FD+   E  + + GFHD   YF  +   +  QN ++ KS
Sbjct: 17  FDEANDEAYESV-GFHDYADYFSRKQRKLQNQNAALYKS 54


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/78 (20%), Positives = 39/78 (50%)
 Frame = -2

Query: 667  VDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSI 488
            +D+Q  ++ R+Y      +  +++   +  Y V+  +G+ +      +  S   +D+K +
Sbjct: 877  IDDQLIEVARDYHPL---WATSVEILSERKYFVTEADGNAVILLRDNV--SPQLSDRKKL 931

Query: 487  ETYEKYCLPQLVDKHNDC 434
              Y+K+ L +L++K   C
Sbjct: 932  RWYKKFYLGELINKTRHC 949


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 349 CYQSGCTQKIA--LGCCRSQIPASTRIPPRSS 438
           C  S C  KIA  L  CR   P S+ +PP SS
Sbjct: 338 CAFSQCLSKIADWLRSCRLTKPESSSVPPSSS 369


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 418 VLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVLAYVDSVEFD 260
           VL P F+NG+N     + N + N V +  A +     LY+    A  D + ++
Sbjct: 155 VLHPQFQNGTNAPYVVQSNLMQNNVNLTGAEQEKGLDLYKNSATANNDEIFYN 207


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 223  LPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFN 95
            LP S N +   ++Y     N+  +++A      + W+ S  FN
Sbjct: 1114 LPPSINSNRNNVFYLNIPGNECYLFEAPSVLAMNEWIHSLNFN 1156


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -2

Query: 610 HDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKY 470
           H N    K  + S SC+   V  SK + I    D  DKK  +    Y
Sbjct: 76  HGNSGSQKTHNVSFSCEIRKVKSSKLSPISNMEDSEDKKEEDESSSY 122


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 697 NDLRDRIKSK-VDEQFDQLEREYSDKIDGFHDNIQYFKD 584
           ND R  ++S  + E+  Q+   +SDK     DNI  F++
Sbjct: 660 NDTRCEVRSSSILEELGQVTHVFSDKTGTLTDNIMLFRN 698


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 682 RIKSKVDEQFDQLEREYSDKIDGFHDNI 599
           R + K D  ++ LEREY    D F +++
Sbjct: 285 RAQLKKDPNYESLEREYQKACDDFENSL 312


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -2

Query: 676 KSKVDE-QFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTD 500
           ++K+++ +F + E+   +KI+G    I   + E  S+  Q  SVL ++  + L+      
Sbjct: 738 EAKIEQAKFKRDEQLLVEKIEGIKKRILLKRREVNSLESQELSVLDTEKIQTLERRISET 797

Query: 499 KKSIETY 479
           +K +E+Y
Sbjct: 798 EKELESY 804


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 496 KSIETYEKYCLPQLVDKHNDCYVAVCVLKPGFENGSN 386
           K I+ +    L + +  HNDC  ++C +  GF + SN
Sbjct: 158 KLIKIWNGEKLVKSILAHNDCVRSLCQIPGGFASCSN 194


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = +2

Query: 713 ASY--RTRNVKHHENGF 757
           ASY  +T NVKHHEN F
Sbjct: 30  ASYCPQTINVKHHENSF 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,072
Number of Sequences: 5004
Number of extensions: 65809
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)