Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a20
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    28   0.12 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    28   0.12 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   4.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.0  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -2

Query: 217 SSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGXIYDKKSKAXYV 38
           +S+ +  +   Y E SK ++      E + E+  + SN +N+K + N    +  SK  Y 
Sbjct: 270 NSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNN----NYNSKKLYY 325

Query: 37  KLHNV 23
            + N+
Sbjct: 326 NIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -2

Query: 217 SSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGXIYDKKSKAXYV 38
           +S+ +  +   Y E SK ++      E + E+  + SN +N+K + N    +  SK  Y 
Sbjct: 281 NSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNN----NYNSKKLYY 336

Query: 37  KLHNV 23
            + N+
Sbjct: 337 NIINI 341


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 401 KSRLQHAYRHVAVVVFVDQLGQTVFFVSFNRLFI 502
           + R +   RH+  V ++D++ + VF  SF  L I
Sbjct: 452 RKRGEKIARHINSVSYIDKVARIVFPASFGLLNI 485


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 761 QLRVHNLVNVHQLSGLVRPHD 823
           +L V +L   HQL  +V PHD
Sbjct: 157 KLHVFDLNTSHQLKQVVMPHD 177


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 735 LNIMRTGFVNCVFIILLMYTN 797
           LN M +  V C  + LLM TN
Sbjct: 691 LNTMESHEVRCTAVFLLMKTN 711


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 192 TFSESLNDDGNINFCTNSSNCLPSNSTLS 278
           T +  ++D G  N C+NS +   S S++S
Sbjct: 7   TENAKVSDSGYSNTCSNSQSQRSSGSSIS 35


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 192 TFSESLNDDGNINFCTNSSNCLPSNSTLS 278
           T +  ++D G  N C+NS +   S S++S
Sbjct: 7   TENAKVSDSGYSNTCSNSQSQRSSGSSIS 35


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = -2

Query: 697 NDLRDRIKSKVDEQFDQLEREYSDKID 617
           ND R R+++ ++   ++ +REY  +++
Sbjct: 404 NDARRRVEAALEAVEEERQREYGIRVE 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,472
Number of Sequences: 438
Number of extensions: 4243
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)