Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17a17
(358 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical pr... 29 1.3
AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity... 29 1.3
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 3.9
U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1 (de... 27 3.9
U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1 (de... 27 3.9
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 26 8.9
U41556-10|AAM51520.1| 415|Caenorhabditis elegans Hypothetical p... 26 8.9
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 26 8.9
AF022984-3|AAB69951.1| 343|Caenorhabditis elegans Hypothetical ... 26 8.9
>Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical
protein C48D1.3 protein.
Length = 576
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 316 LICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 218
L+C+VY+ RS + G+ L++ ++GG L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity
choline transporterCHO-1 protein.
Length = 576
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 316 LICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 218
L+C+VY+ RS + G+ L++ ++GG L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 81 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 221
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 81 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 221
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform a protein.
Length = 839
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 206 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 84
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622
>U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform b protein.
Length = 842
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 206 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 84
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
W05B2.4 protein.
Length = 2265
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -3
Query: 254 CPNSQHRRRSRSLH---GRVFDPNRGTSARLQRIGNN--GGKHCSFSPV 123
CPN+QH LH ++ + + + ++Q IG G + C + PV
Sbjct: 2104 CPNTQHLVSDEQLHTMGEQLIECEKNLATQMQTIGLRLPGQRMCKYLPV 2152
>U41556-10|AAM51520.1| 415|Caenorhabditis elegans Hypothetical
protein C25B8.7 protein.
Length = 415
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 2 IQNVLTSSSYLFLTNLWSWC 61
I+N TS +++F T LW+ C
Sbjct: 255 IENKATSFAFIFATTLWTSC 274
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 153 IIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNPMILKSQ 284
+ PD+LK R + +KNP Q+ + +R + +P LK+Q
Sbjct: 858 LTPDSLKSLRLIGMTLKNPDSQK----INILVRLISSPEYLKNQ 897
>AF022984-3|AAB69951.1| 343|Caenorhabditis elegans Hypothetical
protein ZK488.4 protein.
Length = 343
Score = 25.8 bits (54), Expect = 8.9
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -3
Query: 239 HRRRSRSLHGRVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGRKHYIKVDCRRHDS 60
+ R + S+ + F+ N S + +I + G S + EF+ K + HDS
Sbjct: 216 YSRHNESIVNKFFENNGPLSMFINQIKSTLGSSLSQLTFNIYEFSALKAFCVWKLSYHDS 275
Query: 59 TNSISL 42
T SI++
Sbjct: 276 TISINI 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,301,822
Number of Sequences: 27780
Number of extensions: 165595
Number of successful extensions: 378
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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