Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17a16
(414 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein. 30 1.1
AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like... 28 4.3
AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA... 28 4.3
X14215-2|CAA32432.1| 123|Drosophila melanogaster H2B histone pr... 27 9.8
BT023521-1|AAY84921.1| 332|Drosophila melanogaster IP09970p pro... 27 9.8
AE014134-3508|AAZ66581.1| 123|Drosophila melanogaster CG33868-P... 27 9.8
AE014134-3503|AAZ66576.1| 123|Drosophila melanogaster CG33870-P... 27 9.8
AE014134-3498|AAZ66571.1| 123|Drosophila melanogaster CG33872-P... 27 9.8
AE014134-3493|AAZ66566.1| 123|Drosophila melanogaster CG33874-P... 27 9.8
AE014134-3488|AAZ66561.1| 123|Drosophila melanogaster CG33876-P... 27 9.8
AE014134-3483|AAZ66556.1| 123|Drosophila melanogaster CG33878-P... 27 9.8
AE014134-3478|AAZ66551.1| 123|Drosophila melanogaster CG33880-P... 27 9.8
AE014134-3473|AAZ66546.1| 123|Drosophila melanogaster CG33882-P... 27 9.8
AE014134-3468|AAZ66541.1| 123|Drosophila melanogaster CG33884-P... 27 9.8
AE014134-3463|AAZ66536.1| 123|Drosophila melanogaster CG33886-P... 27 9.8
AE014134-3458|AAZ66531.1| 123|Drosophila melanogaster CG33888-P... 27 9.8
AE014134-3453|AAZ66526.1| 123|Drosophila melanogaster CG33890-P... 27 9.8
AE014134-3448|AAZ66521.1| 123|Drosophila melanogaster CG33892-P... 27 9.8
AE014134-3443|AAZ66516.1| 123|Drosophila melanogaster CG33894-P... 27 9.8
AE014134-3438|AAZ66511.1| 123|Drosophila melanogaster CG33896-P... 27 9.8
AE014134-3433|AAZ66506.1| 123|Drosophila melanogaster CG33898-P... 27 9.8
AE014134-3428|AAZ66501.1| 123|Drosophila melanogaster CG33900-P... 27 9.8
AE014134-3423|AAZ66496.1| 123|Drosophila melanogaster CG33902-P... 27 9.8
AE014134-3419|AAZ66492.1| 123|Drosophila melanogaster CG33904-P... 27 9.8
AE014134-3414|AAZ66487.1| 123|Drosophila melanogaster CG33906-P... 27 9.8
AE014134-3410|AAZ66483.1| 123|Drosophila melanogaster CG33908-P... 27 9.8
AE014134-3405|AAN11124.1| 123|Drosophila melanogaster CG17949-P... 27 9.8
AE014134-3401|AAZ66479.1| 123|Drosophila melanogaster CG33910-P... 27 9.8
AE013599-471|AAM71103.1| 296|Drosophila melanogaster CG30495-PA... 27 9.8
>AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.
Length = 2360
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = -1
Query: 306 WLCE--QVYPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSR 163
WL + +++P + S++ +IN LND+I+ D IY+L+E S KL R
Sbjct: 1235 WLADPKELWPRQQ-SVEEPVLINTVLNDKID-DPIYELIERYSSIEKLIR 1282
>AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like
kinetochore motorprotein CENP-meta protein.
Length = 2244
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = -1
Query: 228 EIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDEL 61
E+EN L ++ K S+ +VD L+ ALL S +L + +D+ LT+D L
Sbjct: 599 EVENQVAVGLEFEFEAHKKSSKLRVDDLLSALLEKESTIESLQKSLDN--LTRDVL 652
>AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA
protein.
Length = 2013
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = -1
Query: 228 EIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDEL 61
E+EN L ++ K S+ +VD L+ ALL S +L + +D+ LT+D L
Sbjct: 599 EVENQVAVGLEFEFEAHKKSSKLRVDDLLSALLEKESTIESLQKSLDN--LTRDVL 652
>X14215-2|CAA32432.1| 123|Drosophila melanogaster H2B histone
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>BT023521-1|AAY84921.1| 332|Drosophila melanogaster IP09970p
protein.
Length = 332
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = -1
Query: 198 VETVDSSNKLSR--RQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFLVTK-- 31
+ ++DS K + ++ ++H L+NN V + HR + ++ + +FL+T
Sbjct: 110 LSSLDSIRKFAENFKKEQRVLHILINNAGVFWEPHRLTKEGFEMHLGVNHIGHFLLTNLL 169
Query: 30 ---LERSIP 13
LERS P
Sbjct: 170 LGVLERSAP 178
>AE014134-3508|AAZ66581.1| 123|Drosophila melanogaster CG33868-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3503|AAZ66576.1| 123|Drosophila melanogaster CG33870-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3498|AAZ66571.1| 123|Drosophila melanogaster CG33872-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3493|AAZ66566.1| 123|Drosophila melanogaster CG33874-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3488|AAZ66561.1| 123|Drosophila melanogaster CG33876-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3483|AAZ66556.1| 123|Drosophila melanogaster CG33878-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3478|AAZ66551.1| 123|Drosophila melanogaster CG33880-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3473|AAZ66546.1| 123|Drosophila melanogaster CG33882-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3468|AAZ66541.1| 123|Drosophila melanogaster CG33884-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3463|AAZ66536.1| 123|Drosophila melanogaster CG33886-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3458|AAZ66531.1| 123|Drosophila melanogaster CG33888-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3453|AAZ66526.1| 123|Drosophila melanogaster CG33890-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3448|AAZ66521.1| 123|Drosophila melanogaster CG33892-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3443|AAZ66516.1| 123|Drosophila melanogaster CG33894-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3438|AAZ66511.1| 123|Drosophila melanogaster CG33896-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3433|AAZ66506.1| 123|Drosophila melanogaster CG33898-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3428|AAZ66501.1| 123|Drosophila melanogaster CG33900-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3423|AAZ66496.1| 123|Drosophila melanogaster CG33902-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3419|AAZ66492.1| 123|Drosophila melanogaster CG33904-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3414|AAZ66487.1| 123|Drosophila melanogaster CG33906-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3410|AAZ66483.1| 123|Drosophila melanogaster CG33908-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3405|AAN11124.1| 123|Drosophila melanogaster CG17949-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE014134-3401|AAZ66479.1| 123|Drosophila melanogaster CG33910-PA
protein.
Length = 123
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 297 EQVYPDKDFSLKLKRVINMFLNDEIE 220
+QV+PD S K ++N F+ND E
Sbjct: 44 KQVHPDTGISSKAMSIMNSFVNDIFE 69
>AE013599-471|AAM71103.1| 296|Drosophila melanogaster CG30495-PA
protein.
Length = 296
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = -1
Query: 198 VETVDSSNKLSR--RQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFLVTK-- 31
+ ++DS K + ++ ++H L+NN V + HR + ++ + +FL+T
Sbjct: 74 LSSLDSIRKFAENFKKEQRVLHILINNAGVFWEPHRLTKEGFEMHLGVNHIGHFLLTNLL 133
Query: 30 ---LERSIP 13
LERS P
Sbjct: 134 LGVLERSAP 142
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,634
Number of Sequences: 53049
Number of extensions: 248137
Number of successful extensions: 732
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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