Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a14
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    29   0.067
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.83 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.7  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 0.067
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
 Frame = -2

Query: 222 IKNDY--NNMHKSFKELQLKRISTEKALKSLNDD----YAKLAAKNARLSNENKVLSNKN 61
           +K+ Y  NN+H   KE     + T+ + K ++D+    +  +   +    NEN++L  +N
Sbjct: 282 VKSQYQANNVHYQGKE---NILWTQASAKGISDNGVLFFGLVGDTSLACWNENRLLDRRN 338

Query: 60  IELI-KHKNLLQ 28
           IE++ K+K  LQ
Sbjct: 339 IEVVAKNKETLQ 350


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 15  CVLAFVINFCV*SIQYFYLIKPYFRYSIW 101
           C  A ++N C  S+  +  IK   RY  W
Sbjct: 108 CSTASILNLCAISLDRYIHIKDPLRYGRW 136


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 90  NENKVLSNKNIELIKHKNLLQKRVHNITII 1
           NEN+ L  +NIE++   N   + +  I II
Sbjct: 328 NENRPLKRRNIEIVAKNNDTLQFISGIKII 357


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 168 RISTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQKRVHNI 10
           +++ +KA      DY  L   N  +S E+  LS  NI+       L + V+ I
Sbjct: 709 QVTWKKAAGDTPGDYTDLKLSNPDISVEDGTLSINNIQKTNEGYYLCEAVNGI 761


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 93  SIWRF*PQVLRNHH*AILVPFQLKFVLVAI 182
           ++WRF     +N   A L+P+ L  VL  I
Sbjct: 3   NVWRFPYLCYKNGGGAFLIPYFLTLVLAGI 32


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 72  IKPYFRYSIWR 104
           IKPY  Y +WR
Sbjct: 139 IKPYDEYYVWR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,439
Number of Sequences: 438
Number of extensions: 3296
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)