Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17a10
(778 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 24 1.4
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 23 3.2
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 4.2
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 5.5
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 5.5
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 5.5
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 5.5
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 5.5
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 5.5
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 22 5.5
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 7.3
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 9.7
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 21 9.7
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 24.2 bits (50), Expect = 1.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 762 HDHTHQX*XYHPH*TDSDIHH 700
H H H YHPH S HH
Sbjct: 317 HPHQHHPSQYHPH-RGSSPHH 336
Score = 21.4 bits (43), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 580 PRGAGGIPVS 609
PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 23.0 bits (47), Expect = 3.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 697 TXITNPEYSSKYLR 656
T I N YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 742 VTXPSPLNRLRHSPP 698
+T PSP R R++PP
Sbjct: 986 MTDPSPFKRGRYTPP 1000
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 483 HYQRQRSSLQGRDRAY 436
HY R+RS + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 483 HYQRQRSSLQGRDRAY 436
HY R+RS + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 483 HYQRQRSSLQGRDRAY 436
HY R+RS + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 483 HYQRQRSSLQGRDRAY 436
HY R+RS + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 483 HYQRQRSSLQGRDRAY 436
HY R+RS + R+R Y
Sbjct: 219 HYSRERSCSRDRNREY 234
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 483 HYQRQRSSLQGRDRAY 436
HY R+RS + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 22.2 bits (45), Expect = 5.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 672 EYSGLVIXVGGECLSLFSGDGXVTLDECGH 761
E+ G+ +G ++L SG+ LD GH
Sbjct: 174 EFGGITQCIGAFDVTLESGERVTFLDTPGH 203
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 7.3
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 543 QRYPQRFRYREVHQ-QGEQDHHYQRQRSSLQGRDR 442
+RY R R RE + + E+++ R+RS + RDR
Sbjct: 270 KRY-SRSREREQNSYKNEREYRKYRERSKERSRDR 303
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 341 KSTMEDEKLKEKISDSDKQTILDKCN 264
+ +++ EK+K +S +T+ KCN
Sbjct: 331 RCSVKREKIKISVSYPSTETLNTKCN 356
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 21.4 bits (43), Expect = 9.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -2
Query: 39 NQHSTPQRKPTCN 1
N H+ P ++P CN
Sbjct: 24 NVHTRPSKEPICN 36
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,462
Number of Sequences: 438
Number of extensions: 4477
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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