Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17a08
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 311 9e-86
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 311 9e-86
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 205 5e-54
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 109 6e-25
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 46 5e-06
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 28 1.8
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 27 4.1
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 5.4
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 26 5.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 7.1
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 9.4
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 9.4
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.4
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 9.4
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 311 bits (763), Expect = 9e-86
Identities = 141/215 (65%), Positives = 166/215 (77%)
Frame = -1
Query: 791 LTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAE 612
+ +++ +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M E
Sbjct: 619 MADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFE 678
Query: 611 ENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEV 432
ENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E
Sbjct: 679 ENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSEN 738
Query: 431 AVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVF 252
A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VF
Sbjct: 739 AMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVF 798
Query: 251 DHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 147
DHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 799 DHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 311 bits (763), Expect = 9e-86
Identities = 141/215 (65%), Positives = 166/215 (77%)
Frame = -1
Query: 791 LTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAE 612
+ +++ +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M E
Sbjct: 619 MADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFE 678
Query: 611 ENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEV 432
ENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E
Sbjct: 679 ENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSEN 738
Query: 431 AVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVF 252
A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VF
Sbjct: 739 AMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVF 798
Query: 251 DHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 147
DHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 799 DHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 205 bits (501), Expect = 5e-54
Identities = 94/199 (47%), Positives = 129/199 (64%), Gaps = 4/199 (2%)
Frame = -1
Query: 785 EKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVM 618
+ Y++D+ +R IW FGP+ G NIL D + LN +K+ + GFQW +EG +
Sbjct: 733 KNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPL 792
Query: 617 AEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP 438
+E +R V F + DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P
Sbjct: 793 CDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAP 852
Query: 437 EVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQC 258
++ IY +L RRRGHV ++ G+P+++V+A +PV +S GF DLR +T GQA Q
Sbjct: 853 ADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQM 912
Query: 257 VFDHWQVLPGDPCEPQSKP 201
VFDHWQV+PGDP + KP
Sbjct: 913 VFDHWQVVPGDPLDKSIKP 931
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 109 bits (261), Expect = 6e-25
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Frame = -1
Query: 749 IWCFGPEGTGPNILVDCSKGVQYL-----------NEIKDSVVAGFQWAAKEGVMAEENL 603
I FGP+ GPNIL D +K ++ +++ + VV FQ +G + E +
Sbjct: 751 IIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPV 810
Query: 602 RGV-----RFNIYDVTLHTDAIHRGG----GQIIPTTRRCLYACLLTAQPRLMEPVYLCE 450
+G+ +F+I D + + + GQ+I + + L PRLM +Y C+
Sbjct: 811 QGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSCD 870
Query: 449 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 270
+Q +G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++ T G A
Sbjct: 871 VQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAA 930
Query: 269 FPQCVFDHWQVLPGDP 222
+PQ +F +++L +P
Sbjct: 931 YPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 46.4 bits (105), Expect = 5e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Frame = -1
Query: 647 FQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLME 468
F A K+G + ++ RF + D H ++ T L A P ++E
Sbjct: 619 FYEALKKGFLIGHPIKNCRFVLEDGAYHPVDSSELAFRL--ATISAFRTAFLQANPMVLE 676
Query: 467 PVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRS 288
P+ I P GG+ G L++R+ + + F ++A +P+N F +++D+R+
Sbjct: 677 PIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIRA 734
Query: 287 NTGGQ 273
T G+
Sbjct: 735 LTKGK 739
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Frame = -2
Query: 637 PLRKELWLKRICVVLDSTSMM*HSILMPSIEV-VAKSFQQLEDACTHVC*LLS--PVSWS 467
P K+ W CV L+ H+ + P+++V + + D+ + ++ PV+
Sbjct: 50 PQLKQTWQFNFCVDLNFLLENMHASVFPTVDVRITHGYDSKSDSLARLTAQMNHCPVNVK 109
Query: 466 LYIFVKFSVLK*LWXXXXXXXXXXXXTFSKSPRWQVHLCSL*RPTYLSMSRSVL-LPICV 290
LY SV +W S + +H +L P ++ MS+++ P+
Sbjct: 110 LY-----SVYVPMWGTHHSKIMVNFFK-DDSCQIVIHTANLVEPDWIGMSQAIFKTPLLY 163
Query: 289 PTPADRPSRSAYSTIGRSS 233
P D S S+ G S
Sbjct: 164 PKANDSLSTSSVPEYGNPS 182
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 465 RLHETGL-SS*QTCVQASSSCWNDLATTSMDGISMECYIIDVESNTTQI 608
++ ET L ++ Q + CW++L+TTS + + II + TT I
Sbjct: 191 QIQETSLGATTQEDESSDGICWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 520 VVGMIWPPPLWMASVWSVTS*MLNLTPRKFSSAITPSLAA 639
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 544 PLWMASVWSVTS*MLNLTPRKFSSAITPSLAAHWNPATTESLISLRY 684
P W+A V ++ S + P FSS + +L A+ N + + + Y
Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYY 89
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 761 EARKIWCFGPEGTGPNILVD--CSKGVQYLNE 672
E + GP G+G ++LVD S+ Q +NE
Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 248 HWQVLPGDPCEPQSKPYNVVQETRKRK 168
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 530 IPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTP 354
IP T RC+ + + + P+L P L + CP + + V+ H F + P
Sbjct: 386 IPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIVINLNP 444
Query: 353 MFIVKAY 333
+K+Y
Sbjct: 445 ALALKSY 451
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 9.4
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +3
Query: 444 LNFTKIYRLHETGLSS*QTCVQASSSCWND-----LAT--TSMDGISMECYIIDVESNTT 602
L+++K++ LH +Q S S +ND LA ++ + + Y++ E +
Sbjct: 192 LSYSKVFFLH---------LLQHSDSSFNDKFLLLLANIPVTVSNVEVLLYLLQQEESLA 242
Query: 603 QILFSHNSFLSGPLESSHNRVLN 671
Q + SFL L S HN+V N
Sbjct: 243 QFDLNGKSFLYHMLVSLHNQVTN 265
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 683 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 591
YL+ + +AGFQ G+ ++N +GVR
Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,411
Number of Sequences: 5004
Number of extensions: 78193
Number of successful extensions: 200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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