Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a08
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   404   e-113
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   399   e-111
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...   212   2e-55
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.       208   3e-54
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    82   4e-16
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    47   2e-05
Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical pr...    42   5e-04
AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical protein
            F25H5.4 protein.
          Length = 852

 Score =  404 bits (995), Expect = e-113
 Identities = 179/215 (83%), Positives = 198/215 (92%)
 Frame = -1

Query: 791  LTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAE 612
            L EKYEYDVTEARKIWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EGV+++
Sbjct: 629  LAEKYEYDVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSD 688

Query: 611  ENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEV 432
            EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR  YA +LTA+PRL+EPVYL EIQCPE 
Sbjct: 689  ENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEA 748

Query: 431  AVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVF 252
            AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVF
Sbjct: 749  AVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVF 808

Query: 251  DHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 147
            DHWQVLPGDP E  +KP  +V +TRKRKGLKEG+P
Sbjct: 809  DHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
            protein.
          Length = 852

 Score =  399 bits (983), Expect = e-111
 Identities = 177/213 (83%), Positives = 196/213 (92%)
 Frame = -1

Query: 785  EKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEEN 606
            EKYEY VTEARKIWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EGV+++EN
Sbjct: 631  EKYEYAVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDEN 690

Query: 605  LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 426
            +RGVRFN++DVTLH DAIHRGGGQIIPT RR  YA +LTA+PRL+EPVYL EIQCPE AV
Sbjct: 691  MRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAV 750

Query: 425  GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 246
            GGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH
Sbjct: 751  GGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 810

Query: 245  WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 147
            WQVLPGDP E  +KP  +V +TRKRKGLKEG+P
Sbjct: 811  WQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score =  212 bits (518), Expect = 2e-55
 Identities = 102/225 (45%), Positives = 143/225 (63%), Gaps = 16/225 (7%)
 Frame = -1

Query: 782  KYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMA 615
            KY +D+  AR IW FGP+ TGPNIL+D +   +     L+ +++S+V GFQWA +EG + 
Sbjct: 725  KYNWDLLAARSIWAFGPDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLC 784

Query: 614  EENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPE 435
            EE +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+  L A PRLMEP Y  E+  P 
Sbjct: 785  EEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPA 844

Query: 434  VAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCV 255
              V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  DLR +T GQAF    
Sbjct: 845  DCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSA 904

Query: 254  FDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 156
            F HWQ++PGDP +          Q  P+     + +TR+RKGL E
Sbjct: 905  FHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 949


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score =  208 bits (508), Expect = 3e-54
 Identities = 101/225 (44%), Positives = 142/225 (63%), Gaps = 16/225 (7%)
 Frame = -1

Query: 782  KYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMA 615
            KY +D+  AR IW FG + TGPNIL+D +   +     L+ +++S+V GFQWA +EG + 
Sbjct: 600  KYNWDLLAARSIWAFGLDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLC 659

Query: 614  EENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPE 435
            EE +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+  L A PRLMEP Y  E+  P 
Sbjct: 660  EEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPA 719

Query: 434  VAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCV 255
              V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  DLR +T GQAF    
Sbjct: 720  DCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSA 779

Query: 254  FDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 156
            F HWQ++PGDP +          Q  P+     + +TR+RKGL E
Sbjct: 780  FHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 824


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical protein
            K10C3.5a protein.
          Length = 894

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 12/189 (6%)
 Frame = -1

Query: 752  KIWCFGPEGTGPNILVDCSKGVQY----------LNEIKDSVVAGFQWAAKEGVMAEENL 603
            +IW FGPE    NIL +  +              +     ++VAGF+     G +  E +
Sbjct: 653  QIWAFGPERARANILFNNVQNYDRDSVWRKTEFGVRRYDQALVAGFELFCNTGPLCNEIM 712

Query: 602  RGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVA 429
             G+   +  ++V     AI   GGQ++   +    A       RL+  +Y C +     A
Sbjct: 713  HGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQA 769

Query: 428  VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 249
            +G ++ VL++R+  V  E     T +F V + +PV ESF F   LR  T G A  Q  F 
Sbjct: 770  LGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFS 829

Query: 248  HWQVLPGDP 222
            HWQV+  DP
Sbjct: 830  HWQVIDEDP 838


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 24/55 (43%), Positives = 28/55 (50%)
 Frame = -1

Query: 386 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 222
           V  E     T +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649


>Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical
           protein F29C12.4 protein.
          Length = 750

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 31/126 (24%), Positives = 53/126 (42%)
 Frame = -1

Query: 650 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 471
           G      EG + +  + G+   I D + H  A+      +I T +  +      A   L+
Sbjct: 586 GLDAIVAEGPLIKSRIAGIHVRIQDGSTH--AVDSTEIAMINTMQNMMRESFEKANWLLL 643

Query: 470 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 291
           EP+   E   P    G +   L +R   +       G    I +A  P+++ FG+T++LR
Sbjct: 644 EPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELR 701

Query: 290 SNTGGQ 273
           S T G+
Sbjct: 702 SLTEGK 707


>AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical
           protein Y119D3B.14 protein.
          Length = 689

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = -1

Query: 542 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 381
           GG+I P       ++C+   L + +  L EPV   +I+   +     I   L RRR H  
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624

Query: 380 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 276
                  T +  + A LP++E+   +  +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 1   LSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 117
           L+ LR+C+       C + TC K FP ++V L+  ++VV
Sbjct: 291 LTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328


>Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical
           protein C46F11.2b protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 673 KLRTLLWLDSSGPLRKELWLKRICVVLDST 584
           K++TL+W     PL KEL L+R+ V  D +
Sbjct: 256 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 285


>Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical
           protein C46F11.2a protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 673 KLRTLLWLDSSGPLRKELWLKRICVVLDST 584
           K++TL+W     PL KEL L+R+ V  D +
Sbjct: 270 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 299


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 231 REDLPMVEYALREGLSAGVGTQIGSKTERLID 326
           +ED+  +EY + E  ++ +GTQ+  KT   +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
            F22E10.2 protein.
          Length = 1324

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 542  GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 396
            G Q +  T RCL A +L  +  +M   +  +    + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,934,897
Number of Sequences: 27780
Number of extensions: 463000
Number of successful extensions: 1262
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)