Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a06
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    30   0.36 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    28   1.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   4.4  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = -1

Query: 400 YPMAYFVNTDYKLKLECARITSDLLYKNKNEVAINRPKISSFKLQLNDVILDTIETIEYD 221
           +P+  ++N + KL  EC  I   +LY NKN+  IN   I      + +  ++     +  
Sbjct: 332 FPIHAYLNFNAKLYEEC--IPPSILYFNKNDENINVGNIEDITNYMYETFINEASLCDKF 389

Query: 220 LQNKVLTITAPVQDQ 176
           ++ K   I  P+  Q
Sbjct: 390 MKRKHERIETPLSSQ 404


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 652 ERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 557
           ERG T  PK   K+   K  I A +  +TTA+
Sbjct: 17  ERGFTNSPKTHPKMSSLKSFIKAVRASKTTAE 48


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 157 IYFNILNSSDSWEVPKYMKNLFDEMQLEPPAILPLG 50
           I +N   ++ +W++P Y +   +E Q  PP   PLG
Sbjct: 36  IPYNTSANNRNWQIPLYWQQRGNEFQASPPP--PLG 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,336,365
Number of Sequences: 5004
Number of extensions: 69138
Number of successful extensions: 204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)