Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a06
         (850 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    25   2.9  
AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide recepto...    24   5.1  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    24   6.7  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    24   6.7  
AF364131-1|AAL35507.1|  378|Anopheles gambiae putative odorant r...    23   8.9  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 280 SFKLQLNDVILDTIETIEYDLQNKVLTITAPVQDQELRKSIIY 152
           +FKLQL++V+L    T+ +     +L  T+  +DQ   +++ Y
Sbjct: 785 NFKLQLDEVLLKANRTLGF-----ILRFTSIFRDQSFLRNLYY 822


>AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide receptor
           protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 403 SDSRMQQ*NYQEAYLIWDTIVFVHFLILQPHSLI--FPTLEKRHSPRGSAKKKHL 561
           SD R  +  Y + Y+ W  ++FV+FL   P SLI  F  +  R   R + +++ L
Sbjct: 249 SDMRTNE-TYIKVYIHWLYMIFVYFL---PFSLISFFNLMIYRQVRRANKERQRL 299


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 702 PTKRRQKKAAAMP*RYESAA*QNPQKSLKSCSSTRKLSLPSKRCAPQ 562
           P +++Q  +A +P    S + + PQ S  S SS+   +LP+    P+
Sbjct: 24  PQQQQQLHSADVPHSSTSQSSRRPQHSSTSASSSSVPTLPTTSGEPR 70


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 702 PTKRRQKKAAAMP*RYESAA*QNPQKSLKSCSSTRKLSLPSKRCAPQ 562
           P +++Q  +A +P    S + + PQ S  S SS+   +LP+    P+
Sbjct: 24  PQQQQQLHSADVPHSSTSQSSRRPQHSSTSASSSSVPTLPTTSGEPR 70


>AF364131-1|AAL35507.1|  378|Anopheles gambiae putative odorant
           receptor Or2 protein.
          Length = 378

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 578 LLGSDSFLVLLQLFRLFW 631
           ++GS  F++L Q+F  +W
Sbjct: 284 MIGSYIFMILSQMFAFYW 301


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,055
Number of Sequences: 2352
Number of extensions: 17041
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90132318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)