Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a06
         (850 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-453|AAF59228.1| 3242|Drosophila melanogaster CG2093-PA ...    32   0.86 
BT014663-1|AAT27287.1|  400|Drosophila melanogaster GH07226p pro...    29   8.1  
AE013599-3773|AAM68289.2|  400|Drosophila melanogaster CG3907-PB...    29   8.1  
AE013599-3772|AAF47137.3|  400|Drosophila melanogaster CG3907-PA...    29   8.1  
AE013599-2370|AAF57935.1|  394|Drosophila melanogaster CG6472-PA...    29   8.1  

>AE013599-453|AAF59228.1| 3242|Drosophila melanogaster CG2093-PA
            protein.
          Length = 3242

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -1

Query: 244  TIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWEVPKYMKNLFDEMQLEPPA 65
            ++++I   +  ++  I   V + E    I+Y  + +S   WE  K  KN F E+ +   A
Sbjct: 2580 SLQSITQSIDLRIHGIGLSVINNETGLDILYLGVTSSGIIWESKKVTKNRFKELTINENA 2639

Query: 64   ILPL 53
            +L +
Sbjct: 2640 LLEI 2643


>BT014663-1|AAT27287.1|  400|Drosophila melanogaster GH07226p
           protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -1

Query: 304 AINRPKISSFKLQLNDV--ILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSS 131
           A+N+   +SFKL  ND+  + +T+      L  ++      + D   R   I  ++   S
Sbjct: 249 ALNKTTFNSFKLLANDLKNVNNTLSQTTKILSEEISLHKTKIDDLLDRSENITSHVATIS 308

Query: 130 DSWEVPKYMKNLFDE 86
           +SW   K     FDE
Sbjct: 309 NSWPEYKQKVTSFDE 323


>AE013599-3773|AAM68289.2|  400|Drosophila melanogaster CG3907-PB,
           isoform B protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -1

Query: 304 AINRPKISSFKLQLNDV--ILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSS 131
           A+N+   +SFKL  ND+  + +T+      L  ++      + D   R   I  ++   S
Sbjct: 249 ALNKTTFNSFKLLANDLKNVNNTLSQTTKILSEEISLHKTKIDDLLDRSENITSHVATIS 308

Query: 130 DSWEVPKYMKNLFDE 86
           +SW   K     FDE
Sbjct: 309 NSWPEYKQKVTSFDE 323


>AE013599-3772|AAF47137.3|  400|Drosophila melanogaster CG3907-PA,
           isoform A protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -1

Query: 304 AINRPKISSFKLQLNDV--ILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSS 131
           A+N+   +SFKL  ND+  + +T+      L  ++      + D   R   I  ++   S
Sbjct: 249 ALNKTTFNSFKLLANDLKNVNNTLSQTTKILSEEISLHKTKIDDLLDRSENITSHVATIS 308

Query: 130 DSWEVPKYMKNLFDE 86
           +SW   K     FDE
Sbjct: 309 NSWPEYKQKVTSFDE 323


>AE013599-2370|AAF57935.1|  394|Drosophila melanogaster CG6472-PA
           protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 585 PSKRCAPQQMFLLCRTTGRVPFF 517
           P++RC P  MF +CR  G  P F
Sbjct: 287 PAQRCEPSDMFGICREPGGGPAF 309


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,832,883
Number of Sequences: 53049
Number of extensions: 737206
Number of successful extensions: 2022
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2022
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)