Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17a06
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 32 0.45
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 32 0.45
Z81058-11|CAH60760.1| 201|Caenorhabditis elegans Hypothetical p... 31 1.0
Z77653-3|CAB01126.1| 462|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z75551-5|CAA99935.1| 462|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z68270-2|CAA92567.1| 532|Caenorhabditis elegans Hypothetical pr... 31 1.4
L25598-1|AAA27942.1| 129|Caenorhabditis elegans Hypothetical pr... 31 1.4
AF039048-11|AAB94232.1| 421|Caenorhabditis elegans Hypothetical... 31 1.4
AC024201-3|AAK93866.1| 238|Caenorhabditis elegans Dnaj domain (... 29 3.2
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr... 29 5.5
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 29 5.5
U28991-2|AAK68307.1| 679|Caenorhabditis elegans Kinesin-associa... 29 5.5
U28991-1|AAM22059.1| 696|Caenorhabditis elegans Kinesin-associa... 29 5.5
AF149287-1|AAF99086.1| 696|Caenorhabditis elegans KAP protein. 29 5.5
AB017107-1|BAA88838.1| 679|Caenorhabditis elegans Kinesin assoc... 29 5.5
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 28 7.3
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 28 7.3
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :... 28 7.3
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 28 7.3
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
K04G2.8b protein.
Length = 1188
Score = 32.3 bits (70), Expect = 0.45
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = -1
Query: 406 PTYPMAYFVNTDYKLKLECARITSDLLYKN-KNEVAINRPKISSFKLQLNDVILDTIETI 230
P A V+T+ K +L + L+ KN K +A RP++ L D ++I
Sbjct: 1041 PGVRQATRVSTNGKSRLPVPKTNGSLVDKNPKPIIASRRPRLPPKPTLLKDKHYPEEDSI 1100
Query: 229 EYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWE 119
E ++ + + APV + E + IY N L + E
Sbjct: 1101 ENQTRDDTIYVNAPVVEAEQER--IYMNALKQQKNIE 1135
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
K04G2.8a protein.
Length = 1186
Score = 32.3 bits (70), Expect = 0.45
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = -1
Query: 406 PTYPMAYFVNTDYKLKLECARITSDLLYKN-KNEVAINRPKISSFKLQLNDVILDTIETI 230
P A V+T+ K +L + L+ KN K +A RP++ L D ++I
Sbjct: 1039 PGVRQATRVSTNGKSRLPVPKTNGSLVDKNPKPIIASRRPRLPPKPTLLKDKHYPEEDSI 1098
Query: 229 EYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWE 119
E ++ + + APV + E + IY N L + E
Sbjct: 1099 ENQTRDDTIYVNAPVVEAEQER--IYMNALKQQKNIE 1133
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 32.3 bits (70), Expect = 0.45
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = -1
Query: 406 PTYPMAYFVNTDYKLKLECARITSDLLYKN-KNEVAINRPKISSFKLQLNDVILDTIETI 230
P A V+T+ K +L + L+ KN K +A RP++ L D ++I
Sbjct: 1039 PGVRQATRVSTNGKSRLPVPKTNGSLVDKNPKPIIASRRPRLPPKPTLLKDKHYPEEDSI 1098
Query: 229 EYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWE 119
E ++ + + APV + E + IY N L + E
Sbjct: 1099 ENQTRDDTIYVNAPVVEAEQER--IYMNALKQQKNIE 1133
>Z81058-11|CAH60760.1| 201|Caenorhabditis elegans Hypothetical
protein F11E6.11 protein.
Length = 201
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 612 NFSDFFGGFVTPRSRNVMAWPPLFFVGVLSDMLILLSTFP*VYF 743
+FS FF G + P ++ WP VLS +++LLS F +Y+
Sbjct: 144 SFSVFFNGSIMPDCSYLVIWPTF----VLSFLILLLSIFVIIYY 183
>Z77653-3|CAB01126.1| 462|Caenorhabditis elegans Hypothetical
protein T28H10.3 protein.
Length = 462
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -1
Query: 346 RITSDLLYKNKNEVAINRPKIS--SFKLQLNDVILDTIETIEYDLQNKVLTITAPVQD 179
R ++DLL NK E INR K + + K ++ ++ + DL ++VLT T PV D
Sbjct: 336 RKSNDLLSSNKLEYKINRIKETRRAIKRNVHMIVQKFFDGESEDLISRVLTQTRPVLD 393
>Z75551-5|CAA99935.1| 462|Caenorhabditis elegans Hypothetical
protein T28H10.3 protein.
Length = 462
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -1
Query: 346 RITSDLLYKNKNEVAINRPKIS--SFKLQLNDVILDTIETIEYDLQNKVLTITAPVQD 179
R ++DLL NK E INR K + + K ++ ++ + DL ++VLT T PV D
Sbjct: 336 RKSNDLLSSNKLEYKINRIKETRRAIKRNVHMIVQKFFDGESEDLISRVLTQTRPVLD 393
>Z68270-2|CAA92567.1| 532|Caenorhabditis elegans Hypothetical
protein ZC410.3 protein.
Length = 532
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 172 LRKSIIYFNILNSSDSWEVPKYMKNLFDEMQLEPPAI 62
L II+FN+ +SSD + Y+KNL L P AI
Sbjct: 401 LGPEIIHFNMEDSSDMTQADTYVKNLDAHSLLRPEAI 437
>L25598-1|AAA27942.1| 129|Caenorhabditis elegans Hypothetical
protein C06G4.4 protein.
Length = 129
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/84 (22%), Positives = 36/84 (42%)
Frame = -1
Query: 643 VTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGESAVFQXXXXXXXXXXXXXXEQK 464
+++ PK+SEK YKKA+A ++ ++ + G+ V +
Sbjct: 1 MSEAPKRSEKSADYKKAVAKQRRIKKLRKMKIKDRAGDVVVSDISDVEVVGNGDEESQDD 60
Query: 463 RLYPILNTPLDNFIVAFVNPTYPM 392
L +L + D V+P++PM
Sbjct: 61 WLNDLLKSDGDGGKAGPVDPSHPM 84
>AF039048-11|AAB94232.1| 421|Caenorhabditis elegans Hypothetical
protein F16B4.1 protein.
Length = 421
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 593 YRCRANAAHHSRCFFFAEPRGECRFSR 513
+ CRA AA RC F E R CR S+
Sbjct: 49 FSCRACAAFFRRCHFLKENRRRCRLSK 75
>AC024201-3|AAK93866.1| 238|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 30 protein.
Length = 238
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/42 (26%), Positives = 28/42 (66%)
Frame = -3
Query: 761 LWLTISKIYSRER*QQNKHVRQNADKKKRRPCHDVTRARRNK 636
LW+T++K+++ +R ++ K + + A+++KRR + +A +
Sbjct: 146 LWITVTKVFA-DREKKRKMLEERANEEKRRSTEALVQAAEKR 186
>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
protein T16G12.5 protein.
Length = 1142
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 703 TCLFCCQRSREYIFDIVNQSVHEVQFLSVGFV 798
TCLF C YI DI+ ++ V LS+G++
Sbjct: 574 TCLFACVEQIPYIKDILKSALDSV--LSIGYI 603
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
protein ZK1193.2 protein.
Length = 1250
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 37 TKSKDLMVKWRGVPIAFHQTNFSCTLVLPNCHYYLKY 147
T + DL W V + HQ+ + T L NC Y Y
Sbjct: 794 TSADDLQTTWLSVLASLHQSYYVVTHQLNNCSNYQDY 830
>U28991-2|AAK68307.1| 679|Caenorhabditis elegans Kinesin-associated
protein protein1, isoform b protein.
Length = 679
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -1
Query: 262 NDVILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWEVPK 110
N ++++ TIE K+L + P+QD ELRK++I S DS +PK
Sbjct: 284 NKIVMEQNGTIE-----KLLKLF-PIQDPELRKAVIMLLFNFSFDSKNLPK 328
>U28991-1|AAM22059.1| 696|Caenorhabditis elegans Kinesin-associated
protein protein1, isoform a protein.
Length = 696
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -1
Query: 262 NDVILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWEVPK 110
N ++++ TIE K+L + P+QD ELRK++I S DS +PK
Sbjct: 301 NKIVMEQNGTIE-----KLLKLF-PIQDPELRKAVIMLLFNFSFDSKNLPK 345
>AF149287-1|AAF99086.1| 696|Caenorhabditis elegans KAP protein.
Length = 696
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -1
Query: 262 NDVILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWEVPK 110
N ++++ TIE K+L + P+QD ELRK++I S DS +PK
Sbjct: 301 NKIVMEQNGTIE-----KLLKLF-PIQDPELRKAVIMLLFNFSFDSKNLPK 345
>AB017107-1|BAA88838.1| 679|Caenorhabditis elegans Kinesin
associated protein kap-1 protein.
Length = 679
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -1
Query: 262 NDVILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWEVPK 110
N ++++ TIE K+L + P+QD ELRK++I S DS +PK
Sbjct: 284 NKIVMEQNGTIE-----KLLKLF-PIQDPELRKAVIMLLFNFSFDSKNLPK 328
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -1
Query: 253 ILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWEVPKYMKNLFDEMQLE 74
+L+ I ++ + K T+ D + I F +SSD E P Y++ L EMQ
Sbjct: 85 LLNNISNLKIKFRQKTYTLN----DVCFKPHITIFQQSSSSDQNEYPHYIQRLLLEMQRL 140
Query: 73 PPAIL 59
P ++
Sbjct: 141 SPCLI 145
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -1
Query: 253 ILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWEVPKYMKNLFDEMQLE 74
+L+ I ++ + K T+ D + I F +SSD E P Y++ L EMQ
Sbjct: 85 LLNNISNLKIKFRQKTYTLN----DVCFKPHITIFQQSSSSDQNEYPHYIQRLLLEMQRL 140
Query: 73 PPAIL 59
P ++
Sbjct: 141 SPCLI 145
>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform b
protein.
Length = 1147
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -1
Query: 253 ILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWEVPKYMKNLFDEMQLE 74
+L+ I ++ + K T+ D + I F +SSD E P Y++ L EMQ
Sbjct: 85 LLNNISNLKIKFRQKTYTLN----DVCFKPHITIFQQSSSSDQNEYPHYIQRLLLEMQRL 140
Query: 73 PPAIL 59
P ++
Sbjct: 141 SPCLI 145
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -1
Query: 253 ILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSSDSWEVPKYMKNLFDEMQLE 74
+L+ I ++ + K T+ D + I F +SSD E P Y++ L EMQ
Sbjct: 85 LLNNISNLKIKFRQKTYTLN----DVCFKPHITIFQQSSSSDQNEYPHYIQRLLLEMQRL 140
Query: 73 PPAIL 59
P ++
Sbjct: 141 SPCLI 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,764,654
Number of Sequences: 27780
Number of extensions: 395705
Number of successful extensions: 1085
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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