Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a06
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    29   0.054
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 0.054
 Identities = 12/58 (20%), Positives = 32/58 (55%)
 Frame = -1

Query: 388 YFVNTDYKLKLECARITSDLLYKNKNEVAINRPKISSFKLQLNDVILDTIETIEYDLQ 215
           Y    D+ + L+     S L +K+    +IN  ++ S+++ + D+++ ++ ++  DL+
Sbjct: 76  YSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVMHSVTSVGIDLE 133


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 78   WNPPPFYH*VFRFGKVSTST 19
            WNPPPF    F  G  +  T
Sbjct: 1164 WNPPPFMPSPFMAGAPNVPT 1183


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 601 KKAIAAEQTLRTTADVS 551
           KKAI A +TLR T  V+
Sbjct: 499 KKAIVAGETLRVTCPVA 515



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 578  NAAHHSRCFFFAEPRGECRFSRV 510
            NA+ HSR    + PR   R+SRV
Sbjct: 1768 NASAHSRSGSQSMPRQNGRYSRV 1790


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 687  QKKAAAMP*RYESAA*QNPQKSLKSCSSTRKLSLP 583
            +K  AAM  +       NP  S K  S+T +L++P
Sbjct: 1731 EKNEAAMKLKKRIEKGANPDLSQKPVSTTEELTVP 1765


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,669
Number of Sequences: 438
Number of extensions: 5276
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)