Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a02
         (853 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    25   0.57 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    25   0.76 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   1.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   7.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.4  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 495 MPAKRRNSVSPRSTLAPSPEPEAPSVFPDTLASRK 391
           +P +  ++ S  S  +PS  PE  SV P +L  R+
Sbjct: 202 IPQRTASTASSASNYSPSQSPEPESVRPLSLVVRR 236


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 584 LQLWEAHHCRC*WFRSWGWL*AGN 513
           L++  AHHCR  +  S GW  AG+
Sbjct: 69  LEMTLAHHCRFKFSSSVGWSPAGH 92


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
 Frame = +3

Query: 264 PILSASLMVSSKSFSTGNTLLTRPIFS-AS*ASKKFPVNTISIAFDLPTYLGRRWVPPAP 440
           PILS  +   + S+ T +     P     S      P++T S+  D   +     +PP P
Sbjct: 175 PILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHP 234

Query: 441 GMVPMLISG*PNFAFSPA*MISHSIASSQPPPRAKPLTAAMMGFP 575
           G+ P      P+ +  PA +++       P    KPL   +   P
Sbjct: 235 GLSPHP----PHLSSHPA-IVTPGPKQELPDLNHKPLNLTIKKMP 274


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
 Frame = +3

Query: 264 PILSASLMVSSKSFSTGNTLLTRPIFS-AS*ASKKFPVNTISIAFDLPTYLGRRWVPPAP 440
           PILS  +   + S+ T +     P     S      P++T S+  D   +     +PP P
Sbjct: 67  PILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHP 126

Query: 441 GMVPMLISG*PNFAFSPA*MISHSIASSQPPPRAKPLTAAMMGFP 575
           G+ P      P+ +  PA +++       P    KPL   +   P
Sbjct: 127 GLSPHP----PHLSSHPA-IVTPGPKQELPDLNHKPLNLTIKKMP 166


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 505 RTALPAHNHPQE 540
           RT LP H HPQ+
Sbjct: 374 RTNLPTHRHPQD 385


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -1

Query: 454 IGTIPGAGGTQ--RLPRYVGKSKAMEIVLTGNFFDAHEAE-KMGLVSKVFPVEKLLEETI 284
           +GT+ GAGGT    +   V  S  + IV  G F +   A+  + +   +   + +L+E +
Sbjct: 287 VGTMTGAGGTAIVSISTSVSTSVYLAIVFNGLFTEEDVADVPINVTLSLDEKKYILQEVV 346

Query: 283 KL 278
           ++
Sbjct: 347 RV 348


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 474 SVSPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETSLM 355
           SVSP +   PSP PE   + P   AS K+  +    T L+
Sbjct: 92  SVSPTTPPTPSPPPE-ERLTPSKDASSKRIXTAFTSTQLL 130


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 455 HWHHPRSRRHPASSQIRWQVESNG 384
           HWH   S+  P  SQ   Q+  NG
Sbjct: 273 HWHLTDSQSFPLVSQRVPQLAKNG 296


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = -2

Query: 492 PAKRRNSVSPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETS 361
           P + R ++       P+      + FP   +  +QWR+    TS
Sbjct: 329 PKRPRPNIDRHEVTRPAAPANRGNGFPKRSSDEQQWRNNQPSTS 372


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = -1

Query: 415 PRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEKLLEETIKLAERIGTHSP 251
           PR   K+ ++ + +       +  EK   +SK+ P E      +KL+ +  +  P
Sbjct: 177 PRITKKANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKSASSLP 231


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = -1

Query: 415 PRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEKLLEETIKLAERIGTHSP 251
           PR   K+ ++ + +       +  EK   +SK+ P E      +KL+ +  +  P
Sbjct: 125 PRITKKANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKSASSLP 179


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = -1

Query: 415 PRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEKLLEETIKLAERIGTHSP 251
           PR   K+ ++ + +       +  EK   +SK+ P E      +KL+ +  +  P
Sbjct: 308 PRITKKANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKSASSLP 362


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,870
Number of Sequences: 336
Number of extensions: 5212
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)