Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17a02
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 66 5e-12
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 31 0.21
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 29 1.1
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 3.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 7.8
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 7.8
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 7.8
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 7.8
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.8
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 66.5 bits (155), Expect = 5e-12
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 10/195 (5%)
Frame = -1
Query: 826 SKKNVGLIQXNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIIT-GNEKAFAAGADIK 650
SK + NRPK LNA+ + + + + +SN+A +II GN ++F++G DIK
Sbjct: 62 SKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLE-ESNLAKVIILKGNGRSFSSGGDIK 120
Query: 649 EMQNNTYSSN---TKQGFLREWE---DISNCGKPIIAAVNGFALGGGCELAMLCDIIYAG 488
+ + F +E+ ++ KP++A +NG +GGG LAM A
Sbjct: 121 AAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIAC 180
Query: 487 EKAKFGQPEINIGTIPGAGGT---QRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKV 317
E F PE IG + RLP Y G + LT ++ + G+ +
Sbjct: 181 EDTMFAMPETGIGYFTDVAASFFFSRLPGYFG----TYLGLTSQIVKGYDCLRTGIATHF 236
Query: 316 FPVEKLLEETIKLAE 272
P +LAE
Sbjct: 237 VPKHMFPHLEDRLAE 251
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 483 RRNSVSPRSTLAPSPEPEAPSVFPDTLASRK 391
RR+S S RS + EPE PS+ + +AS K
Sbjct: 10 RRSSTSKRSVIDDDSEPELPSMTKEAIASHK 40
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 28.7 bits (61), Expect = 1.1
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Frame = +2
Query: 473 EFRLFAGIDDIAQHCQLTTTPKSETINSGNDGLPTVGDVL-PFAKETLFCVAAVCIVLHL 649
E F DDI ++CQ + E + G+ + L P AK+ VA + I L
Sbjct: 171 ELHPFLSQDDIVKYCQ-SHDIAIEAYSPLTHGIRLNDEKLVPIAKKLNISVAQLLIRWSL 229
Query: 650 ----LNISTSRKRLLVTSDDDGSNVAVGVKIIDCLPEFDKQWFA 769
+ I S K+ + SD D N + ++ L FD+ W A
Sbjct: 230 QKGYIPIIKSTKKEHMLSDLDVFNFTIPDDVVQELSSFDEHWHA 273
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 489 AKRRNSVSPRSTLAPSPEPEAPSVFP 412
AK + V+P AP EP PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -2
Query: 519 WQCCAISSMPAKRRNSVSPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETSLMLMKPR 340
+Q + S P RN++ P +T +PSV P+T+ S + S +K +
Sbjct: 357 FQSSSNSPAPYVYRNNLPPSATSFQPSSSRSPSVDPNTVKSAQHIPRMSPSPSASALKTQ 416
Query: 339 KWVLSVK 319
V S K
Sbjct: 417 SHVPSAK 423
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 603 RKPCFVLLLYVLFCISLISAP 665
RKP F LLY ++ +L++ P
Sbjct: 228 RKPAFTSLLYAIYASALLATP 248
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 652 KEMQNNTYSSNTKQGFLRE-WEDISNCGKPIIAAVNG 545
K M+++ S N K F ++ WED+ +C K + NG
Sbjct: 304 KYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQLDNG 340
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 504 SHSIASSQPPPRAKPLTAAMMGFPQLEMSS 593
S+S SS P A+PLTA +GF + S
Sbjct: 268 SNSAQSSLFSPTARPLTARKLGFASSQTKS 297
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 492 PAKRRNSVSPRSTLAPSPEPEAP 424
P K +N++ + L PSPE +AP
Sbjct: 154 PGKEKNTLDLKHCLLPSPEYKAP 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,826,354
Number of Sequences: 5004
Number of extensions: 86313
Number of successful extensions: 249
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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