Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16p24
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   224   7e-59
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   221   5e-58
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   2.9  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   5.2  
06_03_0543 + 21967787-21970261                                         29   5.2  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   6.8  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    28   9.0  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  224 bits (547), Expect = 7e-59
 Identities = 102/163 (62%), Positives = 128/163 (78%)
 Frame = -2

Query: 743 LVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFR 564
           L LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F 
Sbjct: 62  LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 121

Query: 563 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 384
           EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WL
Sbjct: 122 EPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWL 181

Query: 383 LAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 255
           LAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 182 LARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  221 bits (540), Expect = 5e-58
 Identities = 100/159 (62%), Positives = 125/159 (78%)
 Frame = -2

Query: 743 LVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFR 564
           L LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F 
Sbjct: 62  LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 121

Query: 563 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 384
           EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WL
Sbjct: 122 EPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWL 181

Query: 383 LAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 267
           LAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++
Sbjct: 182 LARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 147 TRCSSCFWSTPCSRRMVCPGTR*VEHN 67
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 147 TRCSSCFWSTPCSRRMVCPGTR 82
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -1

Query: 648 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 541
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 398 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 309
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 147 TRCSSCFWSTPCSRRMVCPGTR*VEHN 67
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 297 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 413
           V  + Q   NIP LVT   TTK + F    PPH    +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,469,102
Number of Sequences: 37544
Number of extensions: 443375
Number of successful extensions: 1296
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)