Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16p23
(271 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81031-8|CAJ55248.1| 363|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z69903-8|CAD56585.3| 363|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z69903-5|CAH60762.2| 497|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z69903-4|CAA93775.3| 479|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z69903-3|CAI79241.1| 480|Caenorhabditis elegans Hypothetical pr... 26 4.2
AY836558-1|AAW21316.1| 479|Caenorhabditis elegans casein kinase... 26 4.2
AY836557-1|AAW21315.1| 297|Caenorhabditis elegans casein kinase... 26 4.2
AY836556-1|AAW21314.1| 479|Caenorhabditis elegans casein kinase... 26 4.2
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL032656-4|CAB60309.2| 407|Caenorhabditis elegans Hypothetical ... 25 5.6
U80027-22|AAC48112.1| 336|Caenorhabditis elegans Seven tm recep... 25 7.3
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla... 25 7.3
U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set (trithorax/... 25 7.3
AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical ... 25 7.3
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ... 25 7.3
Z82260-10|CAB05138.1| 361|Caenorhabditis elegans Hypothetical p... 25 9.7
U80953-5|AAO61446.3| 317|Caenorhabditis elegans Dachsund transc... 25 9.7
U80953-4|AAB52555.2| 420|Caenorhabditis elegans Dachsund transc... 25 9.7
>Z81031-8|CAJ55248.1| 363|Caenorhabditis elegans Hypothetical
protein F46F2.2b protein.
Length = 363
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 234 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 271
>Z69903-8|CAD56585.3| 363|Caenorhabditis elegans Hypothetical
protein F46F2.2b protein.
Length = 363
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 234 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 271
>Z69903-5|CAH60762.2| 497|Caenorhabditis elegans Hypothetical
protein F46F2.2c protein.
Length = 497
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 350 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 387
>Z69903-4|CAA93775.3| 479|Caenorhabditis elegans Hypothetical
protein F46F2.2a protein.
Length = 479
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 350 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 387
>Z69903-3|CAI79241.1| 480|Caenorhabditis elegans Hypothetical
protein F46F2.2d protein.
Length = 480
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 350 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 387
>AY836558-1|AAW21316.1| 479|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20C protein.
Length = 479
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 350 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 387
>AY836557-1|AAW21315.1| 297|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20B protein.
Length = 297
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 168 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 205
>AY836556-1|AAW21314.1| 479|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20A protein.
Length = 479
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 350 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 387
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 210 EKLCNYCTTPAKW-I*SCEEF 269
E CN C++PA W SC++F
Sbjct: 1496 EYTCNKCSSPAVWHCQSCDDF 1516
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 210 EKLCNYCTTPAKW-I*SCEEF 269
E CN C++PA W SC++F
Sbjct: 1485 EYTCNKCSSPAVWHCQSCDDF 1505
>AL032656-4|CAB60309.2| 407|Caenorhabditis elegans Hypothetical
protein Y106G6E.6 protein.
Length = 407
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -2
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+ G+ + R +G + +YF
Sbjct: 190 EHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYF 227
>U80027-22|AAC48112.1| 336|Caenorhabditis elegans Seven tm receptor
protein 64 protein.
Length = 336
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 7 YRNMLINFACNSFLG 51
Y+N L+ F+CN++LG
Sbjct: 68 YKNSLLYFSCNTWLG 82
>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
protein 8 protein.
Length = 1206
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 183 VDESQLKGLAKYFNSQTNRGRLNTARATYAVMG 85
+DE QLK + +++T +N +A++G
Sbjct: 578 IDEEQLKSMLSLGSTRTKMSNMNYGSRNHAIVG 610
>U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 19
protein.
Length = 944
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -1
Query: 196 RRLFCR*IPAQRLSKILQQSDKQRKIKYGQSHICSNGS 83
RR+ + R + Q ++GQ +CSNGS
Sbjct: 836 RRMIAQVFEIPRKTTAYNQPSSSNSQQHGQFQVCSNGS 873
>AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical
protein Y92H12A.2 protein.
Length = 724
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -2
Query: 252 RSILRVLCSNYIIFQIRMAGDSSVDESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVIL 73
R +L V CS Y + ++ + +VDE Q++ K N N + T R T A +++
Sbjct: 34 RDLLGV-CSPYCMIRLENSNGDTVDEVQVETKKKTRNPTWN--SVFTFRVTRACQMKILV 90
Query: 72 Y 70
Y
Sbjct: 91 Y 91
>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1152
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 183 VDESQLKGLAKYFNSQTNRGRLNTARATYAVMG 85
+DE QLK + +++T +N +A++G
Sbjct: 552 IDEEQLKSMLSLGSTRTKMSNMNYGSRNHAIVG 584
>Z82260-10|CAB05138.1| 361|Caenorhabditis elegans Hypothetical
protein C32H11.12 protein.
Length = 361
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 225 NYIIFQIRMAGDSSVDESQLKGLAKYFNSQ 136
NY++ Q + G S D + + L++ NSQ
Sbjct: 185 NYLLRQTAIFGGDSTDSTYIGSLSQILNSQ 214
>U80953-5|AAO61446.3| 317|Caenorhabditis elegans Dachsund
transcription factor homologprotein 1, isoform b
protein.
Length = 317
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 171 GIHRQKSLRPS*FEKLCNYCTT 236
G++R K L+ S FEKL + CT+
Sbjct: 53 GVNRCKLLKTSDFEKLYDDCTS 74
>U80953-4|AAB52555.2| 420|Caenorhabditis elegans Dachsund
transcription factor homologprotein 1, isoform a
protein.
Length = 420
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 171 GIHRQKSLRPS*FEKLCNYCTT 236
G++R K L+ S FEKL + CT+
Sbjct: 156 GVNRCKLLKTSDFEKLYDDCTS 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,714,712
Number of Sequences: 27780
Number of extensions: 92183
Number of successful extensions: 304
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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