Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16p18
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   2.2  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    27   3.0  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.9  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   6.8  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.8  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    26   6.8  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 589 VVLNHIPVSQYPGQIEVWYSSHLWALSFVYNFSDHHVRT*QKHNKH*KTSPFSLPGTV 762
           + L+  P+S+   Q+  W+SS     S  Y   D  +   Q   +  K SP  LPG +
Sbjct: 702 LALSSSPLSELHPQLREWFSSKQSVYSLQYPTRDSIIAFFQPILELIKASPTELPGGI 759


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 143 AQSS*GIANT*LMSTSNLGSLSRRYAITFF 232
           A S+ GI    L   SN G LSR++A TFF
Sbjct: 88  ASSNGGIVIQVLGEMSNKGKLSRKFAQTFF 117


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
 Frame = -2

Query: 540 TQDDHVPAIDGTIEWTPGVTMNFTYRFADDPIGETLFGNITWKIDLNQPAHWTHAESTYD 361
           T +  VP+  G     P   +  +    +DP  +TL G +  +  +++     H     D
Sbjct: 12  TANKPVPSYSGDSSQLPSKWLRSSKNMLEDPSFKTLAGKVKDEYFVSESDEKFH-PICID 70

Query: 360 GIYNTY-VIDTE----YKTWALLLHCAEQTEGARYLTAFVLSR-TTKLQKNVMAYLRD 205
            I + +  ID +    ++ +  ++H  EQ+ G++ +  F     +TK    V+A+L D
Sbjct: 71  NIPDEFEEIDAKTFDPHQKYKKVIHAIEQSSGSKDIHYFSYEESSTKTVYYVLAHLND 128


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 417 WKIDLNQPAHWTHAESTYDGIYNTYVIDTEYKTWALL 307
           W++D +QP H T   S++  I +  +ID   K+  L+
Sbjct: 221 WRVDTDQPLHRTIDPSSFIKINSKEIIDFLEKSKTLV 257


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -2

Query: 414 KIDLNQPAH-WTHAESTYDGIYNTYVIDTEY 325
           K  LN P H W  A   +D      +IDT+Y
Sbjct: 74  KFRLNGPIHHWDIANELFDTALGVEIIDTQY 104


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 613 SQYPGQIEVWYSSHLWALSFVYNFSDHHV 699
           +Q  G+   WY   +W + ++  F  HH+
Sbjct: 198 NQIGGKKSSWYHDDIWNMKYLPKFKWHHL 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,422,904
Number of Sequences: 5004
Number of extensions: 75436
Number of successful extensions: 249
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)