Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16p18
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 32 0.58
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 31 1.3
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 29 3.1
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680 29 3.1
04_03_0643 + 18328807-18331969,18332560-18332627 29 3.1
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 29 3.1
09_01_0097 - 1450544-1452058 29 4.1
03_04_0088 + 17209568-17209876,17209966-17210595,17210846-172110... 29 4.1
01_04_0011 + 15067536-15068236,15068283-15068898 28 7.1
>03_02_1035 - 13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -2
Query: 261 FVLSRTTKLQKNVMAYLRDKLPR---FEVDINYVFAIPHDDCAVKPPNPNFGPLMLDAQS 91
F +++ K+V+ Y+ K+PR F +++ +P CAVK PN L +A
Sbjct: 924 FFIAKRKNSNKDVL-YMSAKIPRGIPFLIELTAAVGVPGVKCAVKTPNKEMVALFFEAME 982
Query: 90 KKL 82
L
Sbjct: 983 SLL 985
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 137 FTAQSS*GIANT*LMSTSNLGSLSRRYAITFFCS 238
F A S GIAN ++T N+G L Y++TF CS
Sbjct: 327 FEALSQVGIAN---VTTKNIGKLESSYSLTFKCS 357
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 502 RVDTRSDHELYVPVRGRP-HRRDALWKHYLEDRSEPACALDTR*KHI*RHLQY 347
R+ TR+ +R P + D +W YL S PAC ++T + R+LQY
Sbjct: 137 RLLTRARRAFDRALRALPVTQHDRIWPLYLRLASLPACPVETSLRVFRRYLQY 189
>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
Length = 936
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 316 PSFIFCVYHVRIVNAVICAFSVCP 387
PS + C+YHV+ +NA C F P
Sbjct: 668 PSSVSCLYHVQTINAKGCVFKRYP 691
>04_03_0643 + 18328807-18331969,18332560-18332627
Length = 1076
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 316 PSFIFCVYHVRIVNAVICAFSVCP 387
PS + C+YHV+ +NA C F P
Sbjct: 668 PSSVSCLYHVQTINAKGCVFKRYP 691
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 631 IEVWYSSHLWALSFVYNFSDHHVRT*QKHN 720
+E WYS+ +WA + D VRT KHN
Sbjct: 1620 LETWYSAKMWASLREHPKFDSLVRTRMKHN 1649
>09_01_0097 - 1450544-1452058
Length = 504
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 301 LRGADGRRSLPHCIRSVQDNQTAEERDGVPARQTAKIRSGH 179
+ G RR LP + + QD+ AEE D VP T + H
Sbjct: 187 MEGLLRRRDLPRVVPTKQDDVGAEEADPVPVLLTVADTAAH 227
>03_04_0088 +
17209568-17209876,17209966-17210595,17210846-17211019,
17211434-17211515,17212091-17212278,17212993-17213152,
17213441-17213763,17213860-17213967,17214116-17214189,
17214249-17214361,17214461-17214741
Length = 813
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 423 ITWKIDLNQPAHWTHAESTYDGIYNTYVIDTEYKTWALLLHCAEQT 286
+TW DL P+ W E + IDT + W L+ E+T
Sbjct: 673 LTWACDLVDPSRWHGEEPRPVRAATQWAIDTAFDLWQLIHPEKERT 718
>01_04_0011 + 15067536-15068236,15068283-15068898
Length = 438
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 286 GRRSLP---HCIRSVQDNQTAEERDGVPARQT 200
GRR+LP +R+V++ A+E G+P RQT
Sbjct: 308 GRRTLPSPGEMLRAVEEYNRAKEAAGLPKRQT 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,645,109
Number of Sequences: 37544
Number of extensions: 513130
Number of successful extensions: 1482
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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