Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16p18
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm rece...    30   2.1  
AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical ...    30   2.1  
AL031634-2|CAA21035.1|  351|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z48045-7|CAA88098.1|  329|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical ...    28   8.4  
AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 120 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 439 LAYGVVREPVRKVHGHSWCPLYCTIYGGYVIVLSKHGFH 555
           L  G    P+ K  GH     YC+ +G  V+ LS H F+
Sbjct: 74  LYVGTTFLPISKEFGHFIAAFYCSTFGICVLFLSAHFFY 112


>AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical
           protein Y45G12C.6 protein.
          Length = 274

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 439 LAYGVVREPVRKVHGHSWCPLYCTIYGGYVIVLSKHGFH 555
           L  G    P+ K  GH     YC+ +G  V+ LS H F+
Sbjct: 74  LYVGTTFLPISKEFGHFIAAFYCSTFGICVLFLSAHFFY 112


>AL031634-2|CAA21035.1|  351|Caenorhabditis elegans Hypothetical
           protein Y32B12C.2 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 585 SRSTQPHTSLPVSRANRSVVQLAPLGTFFCLQFFRSPRSNITKTQ*TLKNFTIFI 749
           S S    T+L V      ++ LAP G  + ++F       +  T  TL NF  F+
Sbjct: 252 SASNDRSTNLVVFMTISFIIALAPQGVLYLIKFTYKNDEGVVSTIETLNNFHAFV 306


>Z48045-7|CAA88098.1|  329|Caenorhabditis elegans Hypothetical
           protein C41C4.1 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 754 PVMKMVKFFSVYCVFVMFERGDRKNC 677
           P+ + + FFS  C+F   +  DRK C
Sbjct: 159 PIARFISFFSNKCIFEAQKYPDRKQC 184


>AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical
           protein H04D03.2b protein.
          Length = 749

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 229 ERDGVPARQTAKIRSGHQLCVRDPSRRLRRETPKP*LR 116
           E DG PA    + R+ H++ + +PS    R  PKP +R
Sbjct: 313 EDDGCPAHLIGEYRNFHKILLEEPS--FYRPLPKPEIR 348


>AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical
           protein H04D03.2a protein.
          Length = 747

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 229 ERDGVPARQTAKIRSGHQLCVRDPSRRLRRETPKP*LR 116
           E DG PA    + R+ H++ + +PS    R  PKP +R
Sbjct: 313 EDDGCPAHLIGEYRNFHKILLEEPS--FYRPLPKPEIR 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,436,190
Number of Sequences: 27780
Number of extensions: 442872
Number of successful extensions: 1370
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)