Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16p16
(324 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 28 0.40
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 2.1
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 25 2.8
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 25 2.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 2.8
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 24 4.9
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 24 4.9
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 24 4.9
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 23 8.6
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 23 8.6
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ... 23 8.6
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 0.40
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 14/61 (22%)
Frame = +1
Query: 7 IFFCVCEK-------VTLYLLDYLSTEVSLVVDIW-------ITFVHCPLHISTFFSLYS 144
+F+CVC+ VTLY L+YL+ + L+ ++ + F+HC H T ++
Sbjct: 119 LFYCVCDSRHFTQRLVTLYYLNYLTKYLELMDTVFLFLKKKPLAFLHCYHHGITALLCFT 178
Query: 145 Q 147
Q
Sbjct: 179 Q 179
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 2.1
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 46 LDYLSTEVSLVVDIWITFVHCPLHISTFFSLYSQN 150
+D LST + +W+ + H +H+ T +Y Q+
Sbjct: 459 MDELSTSEKRI--LWLCYEHVAMHVETTLYIYVQS 491
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 253 AFSLQSSHIVEGSPSPLRICYNNRHVVLSNVAVNGFDC 140
A L HI+ G+ L YN L+N NGF+C
Sbjct: 212 ATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFEC 249
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 2.8
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 121 STFFSLYSQNRLLRHCLEQHAGYYNRFAREMDSL--LQYVMIAEKRQRLLIISKRNRM 288
S F+S S N +L+ + +A ++ L +Q+V+I E+ L +I K+NR+
Sbjct: 40 SPFYSHKSNNEMLKMQSQFNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRL 97
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 314 LIFQGVMSVMRFLFEIISNLCL 249
L F V ++ RF+F+I++ LCL
Sbjct: 1749 LAFCAVTAIHRFIFKILTLLCL 1770
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 24.2 bits (50), Expect = 4.9
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 23 VKKLLFIYWTIC 58
+KKLL+ YW +C
Sbjct: 68 LKKLLYYYWEVC 79
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 4.9
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 160 RHCLEQHAGYYNRFA-REMDSLLQYVMIAEKRQRL 261
R LE++ YYNRFA E + L + + +R+
Sbjct: 353 RASLERYLHYYNRFANHEQSAKLDHELYEHTHKRM 387
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 24.2 bits (50), Expect = 4.9
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = -2
Query: 281 FLFEIISNLCLFSAIITYCRRESIS 207
FLF +ISN+ + + +C++ ++
Sbjct: 25 FLFSLISNVNEYERFVPFCQKSKVT 49
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 23.4 bits (48), Expect = 8.6
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 31 VTLYLLDYLSTEVSLVVDIWITFVHCPLHISTFFSLYSQNRLLR 162
+ L L YLS + L +++F PLHIST LY Q +LL+
Sbjct: 1172 LNLILKHYLSM-IYLQFRTYVSFSSLPLHISTV--LY-QKQLLQ 1211
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 23.4 bits (48), Expect = 8.6
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 264 YYFKKKSHDAHNSLKDQLK 320
++FKKKS ++S+ D++K
Sbjct: 148 FHFKKKSKSFYSSMYDKMK 166
>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 244
Score = 23.4 bits (48), Expect = 8.6
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 33 YSLFTGLFVY*GLISGRHLDHFCSLSFAHKHLFFFIQ 143
YSLFTGLFV L+ D F S + A LF +++
Sbjct: 111 YSLFTGLFVNVALVD---FD-FRSEASASNALFLYVK 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,332,163
Number of Sequences: 5004
Number of extensions: 25733
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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