Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16p16
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0699 + 19579713-19580273                                         29   1.1  
09_04_0696 - 19559227-19559622,19559710-19559862,19559957-195607...    27   3.4  
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468           27   3.4  
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087...    27   3.4  
08_02_1523 - 27655507-27655740,27655848-27656003,27656111-276563...    26   5.9  
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574...    26   5.9  
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706...    26   7.8  
04_01_0506 - 6624622-6625450,6625497-6626506                           26   7.8  
02_04_0517 - 23599154-23600089                                         26   7.8  

>09_04_0699 + 19579713-19580273
          Length = 186

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 243 REKAEIAYYFKKKSHDAHNSL 305
           +EKA + YY K K+HD + +L
Sbjct: 55  KEKARVDYYHKNKNHDGNKAL 75


>09_04_0696 -
           19559227-19559622,19559710-19559862,19559957-19560784,
           19561727-19561842,19562286-19562319
          Length = 508

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 26/79 (32%), Positives = 35/79 (44%)
 Frame = -3

Query: 310 SFKEL*ASCDFFLK**AISAFSLQSSHIVEGSPSPLRICYNNRHVVLSNVAVNGFDCIKK 131
           SF +   S D F+    +SA   ++  I E +PS LR     RH  L NV + GF  +K 
Sbjct: 363 SFLDACPSLDTFIV--DVSAKHPENDSIFE-NPSHLRQLPEQRHDNLRNVKITGFRSVKS 419

Query: 130 KRCLCAKDNEQK*SKCLPL 74
              L     E    +CL L
Sbjct: 420 LLELTYHILENTSVECLTL 438


>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
          Length = 1078

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 139 YSQNRLLRHCLEQHAGYYNRFAREMDSLLQYVMIAEKRQRLLIISKRNRMTLIT 300
           Y +  ++R+ LE H  YYN+    M  +++       R   L++     MT +T
Sbjct: 479 YYKELIMRNLLEPHDDYYNQEYCLMHDVVRSFAQYVARDEALVVGDTENMTNLT 532


>04_04_1229 -
           31906854-31907300,31907986-31908181,31908631-31908756,
           31909962-31910329,31910680-31910835,31910968-31911168,
           31911230-31911375,31911439-31911865,31912527-31912627,
           31913197-31913254
          Length = 741

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 229 IVEGSPSPLRICYNNRHVVLSNVAVNGFDCIKKKRCLCAKDNEQK*S-KCLPL 74
           I++G  + LR   + RH  L NV + GF+  K    L +   E   S KC+ L
Sbjct: 374 ILDGEHTNLRQILHPRHANLQNVTITGFNSTKSMIELTSHILENAPSLKCITL 426


>08_02_1523 -
           27655507-27655740,27655848-27656003,27656111-27656306,
           27657175-27657224
          Length = 211

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 226 VEGSPSPLRICYNNRHVVLSNVAVNGFDCIK 134
           V G  SPLR    +RH  L +V + GF   K
Sbjct: 145 VLGDSSPLRQMPEHRHCYLKSVKMTGFSSAK 175


>08_02_1236 +
           25454371-25456801,25456891-25457177,25457258-25457416,
           25457561-25457740,25457823-25458017,25459059-25459157,
           25459508-25460137,25460250-25460591
          Length = 1440

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 228 ICDDCREKAEIAYYFKKKSHDAHNSLKDQL 317
           +CDD REK E A   ++ +  AH   ++ L
Sbjct: 908 LCDDYREKLEAARQEERGARTAHGDKRNDL 937


>05_06_0206 +
           26369089-26369143,26369627-26369733,26369814-26370647,
           26370781-26370939,26371070-26371410,26373894-26373991,
           26374244-26374350,26374715-26375266,26375366-26375524,
           26375631-26376005
          Length = 928

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 232 HIVEGSPSPLRICYNNRHVVLSNVAVNGF 146
           H++    S LR    +RHV L NV + GF
Sbjct: 394 HVISEDSSYLRQMPGHRHVNLKNVKIIGF 422


>04_01_0506 - 6624622-6625450,6625497-6626506
          Length = 612

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 157 LRHCLEQHAGYYNRFAREMDSLLQYVM 237
           +  CL+Q   Y +   RE D LLQ+V+
Sbjct: 167 IARCLDQQEDYASAREREGDDLLQHVL 193


>02_04_0517 - 23599154-23600089
          Length = 311

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 178 HAGYYNRFAREMDSLLQYVMIAEKRQRLLIISKRNRM 288
           +AGYY  +  E   L +   +AEKR R  +I++ +R+
Sbjct: 165 NAGYYGYYDDEDGMLERLEAVAEKRMRNEVITEWHRV 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,894,893
Number of Sequences: 37544
Number of extensions: 144399
Number of successful extensions: 354
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)