Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16p16
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical pr...    27   3.1  
AF026204-6|AAB71248.1|  242|Caenorhabditis elegans Hypothetical ...    27   3.1  
U41276-3|AAA82470.2|  517|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF100307-10|AAC68930.1|  295|Caenorhabditis elegans Hypothetical...    26   7.2  

>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 83  TFGSLLFIVLCT*APFFLYTVKTVYCDIA*N 175
           T G  LF+VL + APFFL T+ + Y D+  N
Sbjct: 250 TVGPTLFLVLPS-APFFLTTLLSPYIDMEIN 279


>Z81116-2|CAB03302.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.2 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 83  TFGSLLFIVLCT*APFFLYTVKTVYCDIA*N 175
           T G  LF+VL + APFFL T+ + Y D+  N
Sbjct: 250 TVGPTLFLVLPS-APFFLATLLSPYIDMEIN 279


>AF026204-6|AAB71248.1|  242|Caenorhabditis elegans Hypothetical
           protein C30E1.3 protein.
          Length = 242

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +1

Query: 79  VDIW-ITFVHCP----LHISTFFSLYSQNRLLRHCLEQHAGYYNRFAREMDS 219
           V IW I  V+CP     H+S +F    QN + R C    + ++ +F   + S
Sbjct: 174 VGIWSIVTVNCPRSYTYHLSKYFYPNCQNNVFRMCSYTKSSFHIQFYNSLPS 225


>U41276-3|AAA82470.2|  517|Caenorhabditis elegans Hypothetical
           protein C52B11.3 protein.
          Length = 517

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 107 VLCT*APFFLYTVKTVYCDIA*NNMPVIIT 196
           +LC   PFF++T  T +C+   +N   I T
Sbjct: 418 ILCW-TPFFVFTPLTAFCESCFSNKETIFT 446


>AF100307-10|AAC68930.1|  295|Caenorhabditis elegans Hypothetical
           protein T12B5.4 protein.
          Length = 295

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 202 RICYNNRHVVLSNVAVNGFDCIKKKRCLCAKD 107
           ++C+ N+   L N   +  D +K K  LC K+
Sbjct: 108 QLCFRNKRKELLNSITSVTDILKNKENLCVKE 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,418,233
Number of Sequences: 27780
Number of extensions: 147722
Number of successful extensions: 380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)