Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16p16
(324 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.53
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.53
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.53
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.53
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.53
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.53
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 24 0.53
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 0.53
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 0.53
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 0.53
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 23 1.2
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 1.2
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 2.8
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 4.9
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 21 4.9
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 20 8.6
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 20 8.6
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.53
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 8 YFFVSVKKLLFIYWTICLLR 67
Y S K+LF+ W CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.53
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 8 YFFVSVKKLLFIYWTICLLR 67
Y S K+LF+ W CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.53
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 8 YFFVSVKKLLFIYWTICLLR 67
Y S K+LF+ W CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.53
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 8 YFFVSVKKLLFIYWTICLLR 67
Y S K+LF+ W CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.53
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 8 YFFVSVKKLLFIYWTICLLR 67
Y S K+LF+ W CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 0.53
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 8 YFFVSVKKLLFIYWTICLLR 67
Y S K+LF+ W CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.8 bits (49), Expect = 0.53
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = +1
Query: 7 IFFCVCEKVTLYLLDYLSTEVSLVVDIWITF 99
I F + ++ +++DY + +VV W++F
Sbjct: 223 ITFKLAREMGFFMMDYYIPSILIVVISWVSF 253
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 0.53
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 8 YFFVSVKKLLFIYWTICLLR 67
Y S K+LF+ W CLLR
Sbjct: 357 YVMPSWIKMLFLQWLPCLLR 376
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 0.53
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 8 YFFVSVKKLLFIYWTICLLR 67
Y S K+LF+ W CLLR
Sbjct: 357 YVMPSWIKMLFLQWLPCLLR 376
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.8 bits (49), Expect = 0.53
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 29 KLLFIYWTICLLR 67
K++F+YW C+LR
Sbjct: 333 KVVFLYWLPCILR 345
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 22.6 bits (46), Expect = 1.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 83 TFGSLLFIVLCT*APFFLYTVKTVYC 160
T G ++ + L PFF + T YC
Sbjct: 273 TVGVIMGVFLICWVPFFCVNIVTSYC 298
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 22.6 bits (46), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 70 SLVVDIWITFVH-CPLHISTFFSLYSQNRLLRHCL 171
+L+ DI+ T + C + +STFF Q + C+
Sbjct: 119 NLLEDIYETLSYDCDVDVSTFFDQLGQEVIYTACV 153
Score = 21.0 bits (42), Expect = 3.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 243 CNHHIL*KGVHLPCESVIITGML 175
C+HH+ KG + I TGM+
Sbjct: 570 CSHHLTHKGKPIRMRIGIHTGMV 592
Score = 19.8 bits (39), Expect = 8.6
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = -3
Query: 223 EGSPSPLRICYNNRHVVLSNVAVNGFDCIKKKRCLCAKD 107
E PLRI + +L ++GFD +++ K+
Sbjct: 618 ESLSEPLRIHVSPTTYILLKYPISGFDLEPRQKEFLPKE 656
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.4 bits (43), Expect = 2.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 2 LSYFFVSVKKLLFIYWTI 55
L F++ + +LF YW I
Sbjct: 253 LGSFYIPMLVMLFFYWRI 270
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 20.6 bits (41), Expect = 4.9
Identities = 6/28 (21%), Positives = 13/28 (46%)
Frame = +1
Query: 10 FFCVCEKVTLYLLDYLSTEVSLVVDIWI 93
+ +C + + LS V ++ IW+
Sbjct: 153 YIAICHPFISHTMSKLSRAVKFIIVIWL 180
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 20.6 bits (41), Expect = 4.9
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 258 IAYYFKKKSHDAHNSLKDQ 314
I YY K HDA+ L +
Sbjct: 71 IGYYKLNKIHDAYKDLNQR 89
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 208 EMDSLLQYVMIAEKRQR 258
+ + L+QYV EKR R
Sbjct: 335 QRNQLIQYVATLEKRLR 351
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = +2
Query: 188 IITDSQGRWTPFYNM**LQRKGRDCLLFQKEI 283
++ S + FY+ + +G +CL F E+
Sbjct: 789 VLFASMPNFADFYSEESINNQGLECLRFLNEV 820
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,888
Number of Sequences: 438
Number of extensions: 1784
Number of successful extensions: 19
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7093251
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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