Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16p13
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048     37   0.017
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877...    32   0.64 
11_03_0128 - 10437407-10438049,10438097-10438272                       31   0.85 
02_05_0541 - 29866396-29866881                                         31   1.1  
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068...    31   1.5  
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763...    29   3.4  
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     29   3.4  
03_06_0733 + 35825541-35826052,35826728-35826871,35828638-358287...    29   3.4  
02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928...    29   6.0  

>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
          Length = 162

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -3

Query: 804 VRMLADPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDG 655
           V+ LAD  G + KAL L  +L   G G RS+RF+++  + KV   N+E  G
Sbjct: 98  VKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIEEGG 148


>08_02_1402 -
           26786011-26786128,26786263-26786516,26787505-26787732,
           26788920-26789759
          Length = 479

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = +3

Query: 630 RRENKTGQCHRAPHSDLEPCCQR*PWRTFWSGNPRAAADWCPGPKP 767
           RRE +T   H  PHSDL P   R P RT  + + R      P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -1

Query: 824 STTPKERCVC*PIPAATSSRLWTWAPICRRSGVSAPKGSPWSSLTA 687
           S  P  RC   P P A+S  L +W   C RS +S+P  S W   TA
Sbjct: 225 SWCPSSRC---PSPTASSESLGSWGSGC-RSHLSSPTCSSWWRTTA 266


>02_05_0541 - 29866396-29866881
          Length = 161

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 824 STTPKERCVC*PIPAATSSRLWTWAPICRRSGVSA 720
           S TP  RC+  PIP   S+ L T A   RR  V+A
Sbjct: 12  SPTPSSRCLLLPIPVVVSTFLQTLAIALRRCSVTA 46


>09_06_0228 +
           21706118-21706252,21706327-21706406,21706742-21706866,
           21706960-21707084,21707162-21707380,21707458-21707580,
           21707661-21707761,21707847-21707899,21707972-21708174
          Length = 387

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 649 ASAIGLHIQILNLAVNDDHGEPFGAETPERRQIGAQVQSLDEVAAGIG*HTH 804
           A  +G  + I+  AV D+ G PFG ++   R +G    SL     G+   TH
Sbjct: 113 AGNLGNLLLIVVPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTH 164


>08_02_0546 -
           18474217-18475133,18475207-18475396,18475870-18476313,
           18476629-18477495,18478858-18479367
          Length = 975

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 436 AQSKCQENCREICVNSRFHVIY--LLRLLAEQFYV*GNAINQ 317
           +QS CQE  R++C    + VIY  L  +L +  Y    A N+
Sbjct: 767 SQSACQEGIRQLCETFAYKVIYNDLSHVLLDSLYAGDTASNR 808


>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 738 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 622
           PL G  S  F+ +I  S +Q  +V+ DGT  SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494


>03_06_0733 +
           35825541-35826052,35826728-35826871,35828638-35828709,
           35829232-35829739
          Length = 411

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
 Frame = -1

Query: 809 ERCVC*PIPAATSSR----------LWTWAPICRRSGVSAPKGSPWSSLTARFKI 675
           ++ VC P P ATSSR          LW W    R+ G    KGSP+  L   F I
Sbjct: 176 KKVVCIPAPPATSSRGGGGEVIPSDLWAW----RKYGQKPIKGSPYPRLCRSFNI 226


>02_03_0408 -
           18692176-18692278,18692590-18692669,18692764-18692890,
           18694016-18694051,18695832-18696085
          Length = 199

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 477 VSKLRQRLY*MLPTHSRNAKKIVGKSALILVFMLFICFGC 358
           VS LR       P H R+   +    A ++ FM+ +CF C
Sbjct: 81  VSSLRSEDTIFFPVHGRSKPSLASVVACMMPFMMGVCFLC 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,608,666
Number of Sequences: 37544
Number of extensions: 388563
Number of successful extensions: 915
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)