Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16p13
(827 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ247769-1|ABB05181.1| 214|Homo sapiens peroxiredoxin 5 protein. 73 2e-12
CR457203-1|CAG33484.1| 214|Homo sapiens PRDX5 protein. 73 2e-12
BC113725-1|AAI13726.1| 214|Homo sapiens peroxiredoxin 5 protein. 73 2e-12
BC113723-1|AAI13724.1| 214|Homo sapiens peroxiredoxin 5 protein. 73 2e-12
BC110983-1|AAI10984.1| 214|Homo sapiens peroxiredoxin 5 protein. 73 2e-12
AJ249483-1|CAB62210.1| 162|Homo sapiens human thiol peroxidase ... 73 2e-12
AF242525-1|AAF99605.1| 214|Homo sapiens hypothetical protein SB... 73 2e-12
AF231705-1|AAF78899.1| 214|Homo sapiens Alu co-repressor 1 prot... 73 2e-12
AF124993-1|AAF27531.1| 162|Homo sapiens peroxisomal membrane pr... 73 2e-12
AF112212-1|AAF17200.1| 162|Homo sapiens putative peroxisomal an... 73 2e-12
AF110731-1|AAF03750.1| 214|Homo sapiens antioxidant enzyme B166... 73 2e-12
AF197952-1|AAF04856.1| 214|Homo sapiens thioredoxin peroxidase ... 70 1e-11
>DQ247769-1|ABB05181.1| 214|Homo sapiens peroxiredoxin 5 protein.
Length = 214
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 141 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 200
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 201 GLTCSLAPNI 210
>CR457203-1|CAG33484.1| 214|Homo sapiens PRDX5 protein.
Length = 214
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 141 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 200
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 201 GLTCSLAPNI 210
>BC113725-1|AAI13726.1| 214|Homo sapiens peroxiredoxin 5 protein.
Length = 214
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 141 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 200
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 201 GLTCSLAPNI 210
>BC113723-1|AAI13724.1| 214|Homo sapiens peroxiredoxin 5 protein.
Length = 214
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 141 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 200
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 201 GLTCSLAPNI 210
>BC110983-1|AAI10984.1| 214|Homo sapiens peroxiredoxin 5 protein.
Length = 214
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 141 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 200
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 201 GLTCSLAPNI 210
>AJ249483-1|CAB62210.1| 162|Homo sapiens human thiol peroxidase
homologous protein protein.
Length = 162
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 89 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 148
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 149 GLTCSLAPNI 158
>AF242525-1|AAF99605.1| 214|Homo sapiens hypothetical protein
SBBI10 protein.
Length = 214
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 141 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 200
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 201 GLTCSLAPNI 210
>AF231705-1|AAF78899.1| 214|Homo sapiens Alu co-repressor 1
protein.
Length = 214
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 141 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 200
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 201 GLTCSLAPNI 210
>AF124993-1|AAF27531.1| 162|Homo sapiens peroxisomal membrane
protein 20 protein.
Length = 162
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 89 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 148
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 149 GLTCSLAPNI 158
>AF112212-1|AAF17200.1| 162|Homo sapiens putative peroxisomal
antioxidant enzyme protein.
Length = 162
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 89 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 148
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 149 GLTCSLAPNI 158
>AF110731-1|AAF03750.1| 214|Homo sapiens antioxidant enzyme B166
protein.
Length = 214
Score = 72.5 bits (170), Expect = 2e-12
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Frame = -3
Query: 822 HNXKGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGT 652
H +GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGT
Sbjct: 141 HKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGT 200
Query: 651 GLSCSLADKI 622
GL+CSLA I
Sbjct: 201 GLTCSLAPNI 210
>AF197952-1|AAF04856.1| 214|Homo sapiens thioredoxin peroxidase
PMP20 protein.
Length = 214
Score = 69.7 bits (163), Expect = 1e-11
Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Frame = -3
Query: 813 KGKVRMLADPSGNFIKALDL---GTNLPPLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLS 643
+GKVR+LADP+G F K DL + + G R KRFSMV+ D V+ LNVEPDGTGL+
Sbjct: 144 EGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLT 203
Query: 642 CSLADKI 622
CSLA I
Sbjct: 204 CSLAPNI 210
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,006,675
Number of Sequences: 237096
Number of extensions: 2259158
Number of successful extensions: 7718
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7706
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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