Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16p11
(584 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT011111-1|AAR82778.1| 458|Drosophila melanogaster LD43688p pro... 63 2e-10
AY069432-1|AAL39577.1| 234|Drosophila melanogaster LD14068p pro... 63 2e-10
AE014134-840|AAF52196.1| 202|Drosophila melanogaster CG33113-PC... 63 2e-10
AE014134-839|AAF52195.1| 222|Drosophila melanogaster CG33113-PA... 63 2e-10
AE014134-838|AAS64638.1| 224|Drosophila melanogaster CG33113-PG... 63 2e-10
AE014134-837|AAF52198.2| 224|Drosophila melanogaster CG33113-PD... 63 2e-10
AE014134-836|AAF52194.1| 234|Drosophila melanogaster CG33113-PE... 63 2e-10
AE014134-835|AAF52197.2| 234|Drosophila melanogaster CG33113-PB... 63 2e-10
AE014134-834|AAF52199.2| 595|Drosophila melanogaster CG33113-PF... 63 2e-10
>BT011111-1|AAR82778.1| 458|Drosophila melanogaster LD43688p
protein.
Length = 458
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Frame = -1
Query: 251 SWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 93
++++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 401 AFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 458
Score = 44.0 bits (99), Expect = 2e-04
Identities = 25/70 (35%), Positives = 30/70 (42%)
Frame = -3
Query: 459 LESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFRLYKNVLQAV 280
+ESLIYWR+ AFR+YK+V QAV
Sbjct: 262 VESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAV 321
Query: 279 QKTNDGHPFK 250
QKTN+GHPFK
Sbjct: 322 QKTNEGHPFK 331
>AY069432-1|AAL39577.1| 234|Drosophila melanogaster LD14068p
protein.
Length = 234
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Frame = -1
Query: 251 SWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 93
++++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 177 AFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 234
Score = 46.0 bits (104), Expect = 4e-05
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Frame = -3
Query: 486 PSLCTILDP------------LESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 343
P +C+ILDP +ESLIYWR+
Sbjct: 17 PLICSILDPNAWFKPERLHPQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYL 76
Query: 342 XXXXXXXXXAFRLYKNVLQAVQKTNDGHPFK 250
AFR+YK+V QAVQKTN+GHPFK
Sbjct: 77 SLLTLFGTVAFRIYKSVTQAVQKTNEGHPFK 107
>AE014134-840|AAF52196.1| 202|Drosophila melanogaster CG33113-PC,
isoform C protein.
Length = 202
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Frame = -1
Query: 251 SWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 93
++++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 145 AFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 202
Score = 45.2 bits (102), Expect = 7e-05
Identities = 26/70 (37%), Positives = 30/70 (42%)
Frame = -3
Query: 459 LESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFRLYKNVLQAV 280
LESLIYWR+ AFR+YK+V QAV
Sbjct: 6 LESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAV 65
Query: 279 QKTNDGHPFK 250
QKTN+GHPFK
Sbjct: 66 QKTNEGHPFK 75
>AE014134-839|AAF52195.1| 222|Drosophila melanogaster CG33113-PA,
isoform A protein.
Length = 222
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Frame = -1
Query: 251 SWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 93
++++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 165 AFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 222
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/71 (36%), Positives = 31/71 (43%)
Frame = -3
Query: 462 PLESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFRLYKNVLQA 283
P+ESLIYWR+ AFR+YK+V QA
Sbjct: 25 PVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQA 84
Query: 282 VQKTNDGHPFK 250
VQKTN+GHPFK
Sbjct: 85 VQKTNEGHPFK 95
>AE014134-838|AAS64638.1| 224|Drosophila melanogaster CG33113-PG,
isoform G protein.
Length = 224
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Frame = -1
Query: 251 SWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 93
++++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 167 AFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 224
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/72 (36%), Positives = 31/72 (43%)
Frame = -3
Query: 465 DPLESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFRLYKNVLQ 286
+ LESLIYWR+ AFR+YK+V Q
Sbjct: 26 ESLESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQ 85
Query: 285 AVQKTNDGHPFK 250
AVQKTN+GHPFK
Sbjct: 86 AVQKTNEGHPFK 97
>AE014134-837|AAF52198.2| 224|Drosophila melanogaster CG33113-PD,
isoform D protein.
Length = 224
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Frame = -1
Query: 251 SWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 93
++++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 167 AFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 224
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/72 (36%), Positives = 31/72 (43%)
Frame = -3
Query: 465 DPLESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFRLYKNVLQ 286
+ LESLIYWR+ AFR+YK+V Q
Sbjct: 26 ESLESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQ 85
Query: 285 AVQKTNDGHPFK 250
AVQKTN+GHPFK
Sbjct: 86 AVQKTNEGHPFK 97
>AE014134-836|AAF52194.1| 234|Drosophila melanogaster CG33113-PE,
isoform E protein.
Length = 234
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Frame = -1
Query: 251 SWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 93
++++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 177 AFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 234
Score = 46.0 bits (104), Expect = 4e-05
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Frame = -3
Query: 486 PSLCTILDP------------LESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 343
P +C+ILDP +ESLIYWR+
Sbjct: 17 PLICSILDPNAWFKPERLHPQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYL 76
Query: 342 XXXXXXXXXAFRLYKNVLQAVQKTNDGHPFK 250
AFR+YK+V QAVQKTN+GHPFK
Sbjct: 77 SLLTLFGTVAFRIYKSVTQAVQKTNEGHPFK 107
>AE014134-835|AAF52197.2| 234|Drosophila melanogaster CG33113-PB,
isoform B protein.
Length = 234
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Frame = -1
Query: 251 SWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 93
++++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 177 AFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 234
Score = 46.0 bits (104), Expect = 4e-05
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Frame = -3
Query: 486 PSLCTILDP------------LESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 343
P +C+ILDP +ESLIYWR+
Sbjct: 17 PLICSILDPNAWFKPERLHPQVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYL 76
Query: 342 XXXXXXXXXAFRLYKNVLQAVQKTNDGHPFK 250
AFR+YK+V QAVQKTN+GHPFK
Sbjct: 77 SLLTLFGTVAFRIYKSVTQAVQKTNEGHPFK 107
>AE014134-834|AAF52199.2| 595|Drosophila melanogaster CG33113-PF,
isoform F protein.
Length = 595
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Frame = -1
Query: 251 SWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRR-----AEGDKDK 93
++++LFTLPK YE NK +D +L+L R+K+ EIT K+R A+P+G + AE +KDK
Sbjct: 538 AFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEKDK 595
Score = 44.0 bits (99), Expect = 2e-04
Identities = 25/70 (35%), Positives = 30/70 (42%)
Frame = -3
Query: 459 LESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFRLYKNVLQAV 280
+ESLIYWR+ AFR+YK+V QAV
Sbjct: 399 VESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAV 458
Query: 279 QKTNDGHPFK 250
QKTN+GHPFK
Sbjct: 459 QKTNEGHPFK 468
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,325,008
Number of Sequences: 53049
Number of extensions: 207824
Number of successful extensions: 541
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2338128087
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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