Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16p11
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 31 0.46
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 31 0.46
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 31 0.46
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.46
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.46
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 215 EMNKAQVDANLELARAKINEITAK 144
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 215 EMNKAQVDANLELARAKINEITAK 144
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 215 EMNKAQVDANLELARAKINEITAK 144
E KA++DAN+E RAKI+EI K
Sbjct: 407 EKLKAEIDANIEETRAKISEIAGK 430
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 215 EMNKAQVDANLELARAKINEITAK 144
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 215 EMNKAQVDANLELARAKINEITAK 144
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 245 IALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 111
+ +F++PK YE N+ +D +L + + + +P R A
Sbjct: 2434 LGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 2478
>Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical
protein W06A7.3e protein.
Length = 204
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 245 IALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 111
+ +F++PK YE N+ +D +L + + + +P R A
Sbjct: 150 LGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 194
>Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical
protein W06A7.3d protein.
Length = 570
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 245 IALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 111
+ +F++PK YE N+ +D +L + + + +P R A
Sbjct: 516 LGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 560
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 245 IALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 111
+ +F++PK YE N+ +D +L + + + +P R A
Sbjct: 2430 LGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 2474
>Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical
protein W06A7.3b protein.
Length = 222
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 245 IALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 111
+ +F++PK YE N+ +D +L + + + +P R A
Sbjct: 168 LGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 212
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 245 IALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 111
+ +F++PK YE N+ +D +L + + + +P R A
Sbjct: 2553 LGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 2597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,989,214
Number of Sequences: 27780
Number of extensions: 96711
Number of successful extensions: 286
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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