Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16o24
(311 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 89 1e-19
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 27 0.86
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 26 1.5
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 1.5
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 2.0
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 2.6
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 25 3.5
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 25 3.5
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 24 4.6
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 23 8.1
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc... 23 8.1
>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 89.0 bits (211), Expect = 1e-19
Identities = 44/76 (57%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = -3
Query: 264 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 88
M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ + VD A GR K Y + G +
Sbjct: 1 MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59
Query: 87 RRMGESDDCIVRLTKE 40
R GESDDCI RLT +
Sbjct: 60 RSKGESDDCINRLTTQ 75
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 0.86
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +2
Query: 134 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 277
P+ A+T TE W++A+ +A F S C Y+R
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYLR 529
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 1.5
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +2
Query: 113 LDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 277
L VS+ S ++ W+ W L E F+ + TN+ + Y+R
Sbjct: 170 LAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLCYIR 224
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 164 SCTEAWSLAWMRRLLAEHFLGQYKST 241
S T+A SL W + +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 182 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 274
SL M +L EH+ G++ SP CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605
>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 25.0 bits (52), Expect = 2.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 17 FLARYTTLSLVNLTMQSSDSPILRI 91
F RYTTL + N SS +P+ +
Sbjct: 91 FQTRYTTLIMFNTVCSSSPNPVFTL 115
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 24.6 bits (51), Expect = 3.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 177 ASVQLVIADVDPATGRAADTSKMYVV-CGAIRRMGESDDCIVRLTKERV 34
+ V L D++ + K Y+ CGA +R+G D +V KE+V
Sbjct: 27 SGVPLTDNDLESEVSKGTWFIKYYLPSCGACKRLGPMWDNMVEKAKEQV 75
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 3.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +1
Query: 88 DSPT--DNIHFRCVSSTTCGGVYVSN 159
D PT D I C CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 24.2 bits (50), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 223 RAVQVNEFTGVVLHFICTST 282
RAV + + TG VLHF T T
Sbjct: 808 RAVPLRDCTGSVLHFFGTMT 827
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 23.4 bits (48), Expect = 8.1
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +2
Query: 26 RYTTLSLVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRL 205
RY+TL +V + S S IL + T ++ + + C++ W LA +
Sbjct: 535 RYSTLYIVYAAIVSC-SVILLLRDMCTDSELLTLNNDMMFFIEVLKECSQTWKLAQRSIV 593
Query: 206 LAEHFLGQYKSTNSPASF 259
L E+ L ++ S + F
Sbjct: 594 LIENTLKGKTNSQSTSEF 611
>SPAC24B11.08c |||COPII-coated vesicle component
Erv46|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 23.4 bits (48), Expect = 8.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 28 VYHSFFG*PHDAIIRLSHPSDSPTDNI 108
++H FG P DA + S+P D +
Sbjct: 246 IHHLSFGPPLDASVHYSNPLDGTVKKV 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,896
Number of Sequences: 5004
Number of extensions: 22219
Number of successful extensions: 69
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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