Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16o24
(311 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 103 2e-23
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 29 0.90
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 29 0.90
Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical pr... 27 2.8
U36199-1|AAA79337.1| 340|Caenorhabditis elegans CeMEF-2 protein. 27 2.8
U36198-1|AAA79336.1| 340|Caenorhabditis elegans CeMef-2 protein. 27 2.8
Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 4.8
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 4.8
Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical pr... 26 6.4
L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical pr... 26 6.4
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 26 6.4
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 26 6.4
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 26 6.4
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 26 6.4
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 26 6.4
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 26 6.4
Z79758-1|CAB61037.1| 340|Caenorhabditis elegans Hypothetical pr... 25 8.4
U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical p... 25 8.4
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 103 bits (248), Expect = 2e-23
Identities = 49/76 (64%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Frame = -3
Query: 264 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAI 88
MQNDAG+ V+LY PRKCS+SNR+I KDHASVQ+ DVDP TGR S Y +CGAI
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60
Query: 87 RRMGESDDCIVRLTKE 40
RRMGESDD I+RL ++
Sbjct: 61 RRMGESDDAILRLAQK 76
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 28.7 bits (61), Expect = 0.90
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +2
Query: 95 PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 274
PQ+ + S GS S C AW W++ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851
Query: 275 RPH 283
+P+
Sbjct: 852 QPY 854
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 28.7 bits (61), Expect = 0.90
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +2
Query: 95 PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 274
PQ+ + S GS S C AW W++ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851
Query: 275 RPH 283
+P+
Sbjct: 852 QPY 854
>Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical
protein C14A4.3 protein.
Length = 603
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = -3
Query: 309 FRICQFRVPCGRTYKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVI 157
F +C + RTY + N+ G V++Y +NR H +++ +
Sbjct: 408 FILCFAILSASRTYSIHNNYGSHVEIYRSLNAELTNRTNFKNFHDPIRVCV 458
>U36199-1|AAA79337.1| 340|Caenorhabditis elegans CeMEF-2 protein.
Length = 340
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 26 RYTTLSLVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGS 148
R LS ++ SS S L I P T++ D S P+A +
Sbjct: 195 RNDPLSSTSVAPSSSSSKHLDIPPSTSFAYDTSRLHPIAAA 235
>U36198-1|AAA79336.1| 340|Caenorhabditis elegans CeMef-2 protein.
Length = 340
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 26 RYTTLSLVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGS 148
R LS ++ SS S L I P T++ D S P+A +
Sbjct: 195 RNDPLSSTSVAPSSSSSKHLDIPPSTSFAYDTSRLHPIAAA 235
>Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical
protein C08F8.4 protein.
Length = 540
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 179 WSLAWMRRLLAEHFLGQYKS 238
W++AW+RR++ E G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 67 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 162
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 67 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 162
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical
protein F32H2.1b protein.
Length = 928
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 275 VHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 171
+H+ ++ N + C A+ P AS L MLQ
Sbjct: 695 LHVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729
>Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical
protein F32H2.1a protein.
Length = 944
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 275 VHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 171
+H+ ++ N + C A+ P AS L MLQ
Sbjct: 695 LHVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729
>L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical
protein R05D3.2 protein.
Length = 737
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 17 FLARYTTLSLVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAITS 166
F+ Y+ L +L D+P+ I ++ +L V++A PVA +T +T+
Sbjct: 611 FVGLYSLPVLRSLRPVRKDTPMPTIIINSSIVLVVASALPVAVNTVGMTT 660
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 278 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTM 177
++H+ R TPVN T N RP S ++T+
Sbjct: 839 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTL 874
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform b
protein.
Length = 4203
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 278 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTM 177
++H+ R TPVN T N RP S ++T+
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTL 791
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 278 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTM 177
++H+ R TPVN T N RP S ++T+
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTL 1112
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 278 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTM 177
++H+ R TPVN T N RP S ++T+
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTL 1112
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 278 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTM 177
++H+ R TPVN T N RP S ++T+
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTL 1112
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 278 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTM 177
++H+ R TPVN T N RP S ++T+
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTL 791
>Z79758-1|CAB61037.1| 340|Caenorhabditis elegans Hypothetical
protein W10D5.1 protein.
Length = 340
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 26 RYTTLSLVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGS 148
R LS ++ SS S L P T++ D S P+A +
Sbjct: 195 RNDPLSSTSVAPSSSSSKHLDFPPSTSFAYDTSRLHPIAAA 235
>U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical
protein K09H11.11 protein.
Length = 121
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 211 GQQPPHPR*GPCF 173
GQQPPHP+ P F
Sbjct: 19 GQQPPHPQIDPLF 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,451,787
Number of Sequences: 27780
Number of extensions: 132958
Number of successful extensions: 399
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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