Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16o24
(311 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 2.6
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 4.6
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 4.6
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 20 8.0
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 20 8.0
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 20 8.0
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 20 8.0
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 20 8.0
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 20 8.0
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 20 8.0
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 20 8.0
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 20 8.0
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 20 8.0
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 20 8.0
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 20 8.0
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 20 8.0
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 20 8.0
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 20 8.0
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 20 8.0
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 20 8.0
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 2.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 26 RYTTLSLVNLTMQSSDSPILRIAPQTTYILD 118
RY S +++++S SP++ TY LD
Sbjct: 1201 RYAIPSAGDISIESKSSPLVYKRNINTYTLD 1231
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 20.6 bits (41), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 135 GRAADTSKMYVVCGAIRRMGESD 67
GR +++K YVV + GES+
Sbjct: 1182 GRGIESAKSYVVDVRVHVPGESE 1204
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 20.6 bits (41), Expect = 4.6
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +3
Query: 63 NHQTLPSFG*PHRQH 107
NH P+ G PH H
Sbjct: 340 NHTMGPTMGPPHHHH 354
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 133 IPPDMYRLRPPPNPRFGPMY 152
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 133 IPPDMYRLRPPPNPRFGPMY 152
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 133 IPPDMYRLRPPPNPRFGPMY 152
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 133 IPPDMYRLRPPPNPRFGPMY 152
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 133 IPPDMYRLRPPPNPRFGPMY 152
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 133 IPPDMYRLRPPPNPRFGPMY 152
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 133 IPPDMYRLRPPPNPRFGPMY 152
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 19.8 bits (39), Expect = 8.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 267 KMQNDAGEFVDLYC 226
K+ +AGEF +L C
Sbjct: 592 KLPMNAGEFANLQC 605
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 382 IPPDMYRLRPPPNPRFGPMY 401
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 382 IPPDMYRLRPPPNPRFGPMY 401
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 382 IPPDMYRLRPPPNPRFGPMY 401
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 382 IPPDMYRLRPPPNPRFGPMY 401
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 382 IPPDMYRLRPPPNPRFGPMY 401
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 382 IPPDMYRLRPPPNPRFGPMY 401
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 381 IPPDMYRLRPPPNPRFGPMY 400
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 366 IPPDMYRLRPPPNPRFGPMY 385
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 19.8 bits (39), Expect = 8.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 229 LPEEMLG-QQPPHPR*GPCF 173
+P +M + PP+PR GP +
Sbjct: 382 IPPDMYRLRPPPNPRFGPMY 401
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,321
Number of Sequences: 438
Number of extensions: 1610
Number of successful extensions: 25
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 6595479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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