Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16o23
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK056994-1|BAB71337.1|  500|Homo sapiens protein ( Homo sapiens ...    36   0.18 
BC063136-1|AAH63136.1|  538|Homo sapiens NEB protein protein.          35   0.32 
AF117675-1|AAD20347.1|  977|Homo sapiens nebulin protein.              32   2.2  
AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein.              30   6.9  
X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein.                30   9.1  

>AK056994-1|BAB71337.1|  500|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32432 fis, clone SKMUS2001157, highly similar to
           Homo sapiens nebulin (NEB) gene. ).
          Length = 500

 Score = 35.5 bits (78), Expect = 0.18
 Identities = 60/184 (32%), Positives = 76/184 (41%), Gaps = 14/184 (7%)
 Frame = -3

Query: 599 TSRILRVKHNQEMMSFVFQN*I*EMMSFVFQN*TGFTSIILLVKHNQGMMSFVF--QN*T 426
           T  + RVKHNQE +S V      E M          T  +  VKHNQ  +S V   +N  
Sbjct: 29  TPEMQRVKHNQENLSSVLYK---ENMG--KGTPLPVTPEMERVKHNQENISSVLYKENMG 83

Query: 425 R-----FTSRILRVKHNQEMMSFVFQN*I*EMMSFVFQN*TGFTSIILLVKHNQGMMSFV 261
           +      T  + RVKHNQE +S V      E M          T  +  VKHNQ  +S V
Sbjct: 84  KGTPLPVTPEMERVKHNQENISSVLYK---ENMG--KGTPLAVTPEMERVKHNQENISSV 138

Query: 260 F-------QN*TGFTSRILRVKHNQKMMSFVFQN*MMSFVFQN*TGFTSRILRVKHNQKM 102
                      T  T  + RVK NQ+ +S V     +       T FT  + RVK NQ+ 
Sbjct: 139 LYKENVGKATATPVTPEMQRVKRNQENISSVLYKENLGKATP--TPFTPEMERVKRNQEN 196

Query: 101 MSFV 90
            S V
Sbjct: 197 FSSV 200


>BC063136-1|AAH63136.1|  538|Homo sapiens NEB protein protein.
          Length = 538

 Score = 34.7 bits (76), Expect = 0.32
 Identities = 60/184 (32%), Positives = 76/184 (41%), Gaps = 14/184 (7%)
 Frame = -3

Query: 599 TSRILRVKHNQEMMSFVFQN*I*EMMSFVFQN*TGFTSIILLVKHNQGMMSFVF--QN*T 426
           T  + RVKHNQE +S V      E M          T  +  VKHNQ  +S V   +N  
Sbjct: 67  TPEMQRVKHNQENLSSVLYK---ENMG--KGTPLPVTPEMERVKHNQENISSVLYKENMG 121

Query: 425 R-----FTSRILRVKHNQEMMSFVFQN*I*EMMSFVFQN*TGFTSIILLVKHNQGMMSFV 261
           +      T  + RVKHNQE +S V      E M          T  +  VKHNQ  +S V
Sbjct: 122 KGTPLPVTPEMERVKHNQENISSVLYK---ENMG--KGTPLPVTPEMERVKHNQENISSV 176

Query: 260 F-------QN*TGFTSRILRVKHNQKMMSFVFQN*MMSFVFQN*TGFTSRILRVKHNQKM 102
                      T  T  + RVK NQ+ +S V     +       T FT  + RVK NQ+ 
Sbjct: 177 LYKENVGKATATPVTPEMQRVKRNQENISSVLYKENLGKATP--TPFTPEMERVKRNQEN 234

Query: 101 MSFV 90
            S V
Sbjct: 235 FSSV 238


>AF117675-1|AAD20347.1|  977|Homo sapiens nebulin protein.
          Length = 977

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 60/189 (31%), Positives = 75/189 (39%), Gaps = 16/189 (8%)
 Frame = -3

Query: 608  TRFTSRILRVKHNQEMMSFV---------FQN*I*EMMSFVFQN*TGFTSIILLVKHNQG 456
            T  T  I RVK NQE  S V             I   M  V +N   F+S+  L K N G
Sbjct: 503  TTVTPEIERVKRNQENFSSVLYKENLGKGIPTPITPEMERVKRNQENFSSV--LYKENMG 560

Query: 455  MMSFVFQN*TRFTSRILRVKHNQEMMSFVFQN*I*EMMSFVFQN*TGFTSIILLVKHNQG 276
              + +       T  + RVKHNQE +S V      E M          T  +  VKHNQ 
Sbjct: 561  KGTPL-----PVTPEMERVKHNQENISSVLYK---ENMG--KGTPLPVTPEMERVKHNQE 610

Query: 275  MMSFVF-------QN*TGFTSRILRVKHNQKMMSFVFQN*MMSFVFQN*TGFTSRILRVK 117
             +S V           T  T  + RVK NQ+ +S V     +       T FT  + RVK
Sbjct: 611  NISSVLYKENVGKATATPVTPEMQRVKRNQENISSVLYKENLGKATP--TPFTPEMERVK 668

Query: 116  HNQKMMSFV 90
             NQ+  S V
Sbjct: 669  RNQENFSSV 677


>AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein.
          Length = 2802

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 59/189 (31%), Positives = 74/189 (39%), Gaps = 16/189 (8%)
 Frame = -3

Query: 608  TRFTSRILRVKHNQEMMSFV---------FQN*I*EMMSFVFQN*TGFTSIILLVKHNQG 456
            T  T  I RVK NQE  S V             I   M  V +N   F+S+  L K N G
Sbjct: 2359 TTVTPEIERVKRNQENFSSVLYKENLGKGIPTPITPEMERVKRNQENFSSV--LYKENMG 2416

Query: 455  MMSFVFQN*TRFTSRILRVKHNQEMMSFVFQN*I*EMMSFVFQN*TGFTSIILLVKHNQG 276
              + +       T  + RVKHNQE +S V      E +       T  T  +  VK NQ 
Sbjct: 2417 KGTPL-----AVTPEMERVKHNQENISSVLYK---ENVGKATA--TPVTPEMQRVKRNQE 2466

Query: 275  MMSFVF-------QN*TGFTSRILRVKHNQKMMSFVFQN*MMSFVFQN*TGFTSRILRVK 117
             +S V           T FT  + RVK NQ+  S V     M       T  T  + R K
Sbjct: 2467 NISSVLYKENLGKATPTPFTPEMERVKRNQENFSSVLYKENMRKATP--TPVTPEMERAK 2524

Query: 116  HNQKMMSFV 90
             NQ+ +S V
Sbjct: 2525 RNQENISSV 2533


>X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein.
          Length = 6669

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 59/189 (31%), Positives = 74/189 (39%), Gaps = 16/189 (8%)
 Frame = -3

Query: 608  TRFTSRILRVKHNQEMMSFV---------FQN*I*EMMSFVFQN*TGFTSIILLVKHNQG 456
            T  T  I RVK NQE  S V             I   M  V +N   F+S+  L K N G
Sbjct: 6226 TTVTPEIERVKRNQENFSSVLYKENLGKGIPTPITPEMERVKRNQENFSSV--LYKENMG 6283

Query: 455  MMSFVFQN*TRFTSRILRVKHNQEMMSFVFQN*I*EMMSFVFQN*TGFTSIILLVKHNQG 276
              + +       T  + RVKHNQE +S V      E +       T  T  +  VK NQ 
Sbjct: 6284 KGTPL-----PVTPEMERVKHNQENISSVLYK---ENVGKATA--TPVTPEMQRVKRNQE 6333

Query: 275  MMSFVF-------QN*TGFTSRILRVKHNQKMMSFVFQN*MMSFVFQN*TGFTSRILRVK 117
             +S V           T FT  + RVK NQ+  S V     M       T  T  + R K
Sbjct: 6334 NISSVLYKENLGKATPTPFTPEMERVKRNQENFSSVLYKENMRKATP--TPVTPEMERAK 6391

Query: 116  HNQKMMSFV 90
             NQ+ +S V
Sbjct: 6392 RNQENISSV 6400


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,343,680
Number of Sequences: 237096
Number of extensions: 1405820
Number of successful extensions: 1571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)