Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16o16
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0104 + 8329231-8329902                                           31   1.4  
11_02_0097 - 8285425-8286090                                           31   1.4  
11_02_0093 - 8238947-8239615                                           29   3.2  

>11_02_0104 + 8329231-8329902
          Length = 223

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -2

Query: 684 YHIISEDAQGLGSTWSYHFHTLVSSYHFLGYFT 586
           Y I S   Q  G TWS+ FH   S Y   GY T
Sbjct: 45  YDIESSKFQVAGHTWSFFFHLNASKYSGNGYST 77


>11_02_0097 - 8285425-8286090
          Length = 221

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 696 SFHG--YHIISEDAQGLGSTWSYHFHTLVSSYHFLGYFT 586
           S HG  Y I S   Q  G TWS+ FH   S Y   GY T
Sbjct: 39  SHHGSKYDIESSKFQAAGHTWSFFFHN-ASKYSGNGYST 76


>11_02_0093 - 8238947-8239615
          Length = 222

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 684 YHIISEDAQGLGSTWSYHFHTLVSSYHFLGYFT 586
           Y+I S      G TWS+ FH   S Y   GY T
Sbjct: 45  YNIESSKFHVAGHTWSFFFHLNASKYSGNGYST 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,793,753
Number of Sequences: 37544
Number of extensions: 342704
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)