Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16o16
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021474-1|CAA16308.1|  343|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF068708-6|AAC17758.1|  341|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z70210-9|CAE17897.1|  403|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.    28   6.6  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    28   8.7  
AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AL021474-1|CAA16308.1|  343|Caenorhabditis elegans Hypothetical
           protein Y32F6A.1 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 591 SNQGNDMMKQEYENDKT---KLTQALVHLLRLCDIHENCKNSVI 713
           S Q ND + QE EN+++    L    +HLL   D +EN   +V+
Sbjct: 25  SQQNNDNLNQENENNESFSDSLVLTTIHLLTEEDFNENTLKAVV 68


>AF068708-6|AAC17758.1|  341|Caenorhabditis elegans Hypothetical
           protein C18G1.3 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 108 LNNATDQIVSIEVAIGKNLWHVLILII*ENKIIVLDALFISVKIQQNCYY 257
           ++N TD+I + E+    +LW V + I+  N +   D     +K+ Q+  Y
Sbjct: 231 VSNETDEITAWEIPYSSSLWEVQV-ILHRNDLYNADYFPARIKVMQSLVY 279


>Z70210-9|CAE17897.1|  403|Caenorhabditis elegans Hypothetical
           protein K08H2.9 protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 108 LNNATDQIVSIEVAIGKNLWHVLILII*ENKIIVLDALFISVKIQQNCYY 257
           ++N TD+I + E+    +LW V + I+  N +   D     +K+ Q+  Y
Sbjct: 286 VSNNTDRITTWEIPYSSSLWEVQV-ILHRNDLYNADYFPARIKVMQSLVY 334


>Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical
           protein C11H1.4a protein.
          Length = 996

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/32 (34%), Positives = 24/32 (75%)
 Frame = +1

Query: 508 RVLSIT*SNIEEVLQSRPLLSRRTPVCEVTKE 603
           R+ S+    +E+V+++RP++SR+  + ++TKE
Sbjct: 614 RLSSLNDGFVEQVMRARPIVSRKIELEQLTKE 645


>AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.
          Length = 996

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/32 (34%), Positives = 24/32 (75%)
 Frame = +1

Query: 508 RVLSIT*SNIEEVLQSRPLLSRRTPVCEVTKE 603
           R+ S+    +E+V+++RP++SR+  + ++TKE
Sbjct: 614 RLSSLNDGFVEQVMRARPIVSRKIELEQLTKE 645


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 174 LILII*ENKIIVLDALFISVKIQQNCYYINLYCF 275
           +I I+ E +I   +  F + +++  C Y+N++CF
Sbjct: 541 IISILDEEEIFEKETPFSNKELESICKYVNIFCF 574


>AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical
           protein H04D03.4 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 501 PNLCHIEDGTTIFAERDSSDRIMSSLPISLRFLVKSTHSDYVVSLNLK 358
           PNL +++   T     D   ++     ++LR+L  S H+D +    LK
Sbjct: 181 PNLTYLDISETNIKSLDGISKLQKLYILNLRYLKFSAHTDIIELFELK 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,902,736
Number of Sequences: 27780
Number of extensions: 322059
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)