Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16o15
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0132 - 20058638-20058907 29 1.9
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927... 29 2.5
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165 29 2.5
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 28 3.3
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 28 3.3
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 27 5.7
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 27 5.7
01_06_0743 + 31622683-31623723 27 5.7
12_01_0067 + 578828-579176,579429-579505,579850-579954 27 7.5
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 27 7.5
05_07_0214 - 28451861-28453069 27 7.5
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 27 7.5
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 27 10.0
08_02_0480 + 17632176-17632814,17633838-17633906 27 10.0
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 27 10.0
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 27 10.0
04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632 27 10.0
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304... 27 10.0
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 27 10.0
>02_04_0132 - 20058638-20058907
Length = 89
Score = 29.1 bits (62), Expect = 1.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 239 RPFERPWC*WFATCRRPPFA 298
+PF PWC + C +PPF+
Sbjct: 14 KPFVAPWCRYPLLCNQPPFS 33
>06_01_1126 -
9277885-9277935,9278129-9278209,9278297-9278350,
9278433-9278564,9278641-9278715,9279056-9279133,
9279215-9279327,9279421-9279535,9280565-9280754,
9281355-9281464,9281559-9281654,9281756-9281818,
9281911-9281988,9282452-9282564,9282664-9282721,
9282797-9282920,9282999-9283060,9283131-9283195,
9283264-9283324,9284242-9284307,9284472-9284531,
9284830-9284960,9285517-9285592,9285701-9285769,
9286065-9286112,9286552-9286671,9286918-9287034,
9287290-9287405,9288348-9288519,9289057-9289100,
9290359-9290712,9291680-9291806
Length = 1072
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 317 PAVCCGGFFVFATCCCQCPYHRYHLLKQ 400
P F A+CCC+ P H+ HL Q
Sbjct: 105 PVDATAPFVASASCCCRHPVHQQHLRLQ 132
>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
Length = 476
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 308 KGLPAVCCG--GFFVFATCCCQCPYHRYHLLKQSWLSSISRDISLS 439
K LP + CG G ++F T + + +YHL ++W I I S
Sbjct: 386 KALPTIFCGDTGGYIFHTPPTELFFTQYHLSSRTWSPLIDGSIGNS 431
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 256 VVLMVCNMSTAAICVCAEGFAGGXXXXXXXVCDMLLPVSISSIS 387
++LMVC + + A+ + EG+ G + + L V ++++S
Sbjct: 177 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 220
>11_01_0240 +
1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 256 VVLMVCNMSTAAICVCAEGFAGGXXXXXXXVCDMLLPVSISSIS 387
++LMVC + + A+ + EG+ G + + L V ++++S
Sbjct: 155 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 198
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 354 VANTKKPPQQTAGKPFGANANGGRR 280
+AN+K+ P TAG G GGRR
Sbjct: 1 MANSKRLPYSTAGGGGGGGGGGGRR 25
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 348 NTKKPPQQTAGKPFGANANGGRRHVANHQHHGLSNGRVVVN 226
NT P +TA G N GR H N GL+ +V N
Sbjct: 242 NTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFN 282
>01_06_0743 + 31622683-31623723
Length = 346
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 375 YGHWQQHVANTKKPPQQTAGKPFGANANGGRRHV-ANHQHHGLSNGRVVVNQRHYAQ*N 202
YG+ ++ +P + G+ FG NA GG+ + N+Q R R Y N
Sbjct: 243 YGYGRESNPVRTRPEEFNGGRKFGGNAAGGQEYANGNYQEEFGVGHRAGEQVRRYGNGN 301
>12_01_0067 + 578828-579176,579429-579505,579850-579954
Length = 176
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -1
Query: 263 NTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLD 84
N + S+T + + +TPN E L + A L + +N+ + V+VLD
Sbjct: 65 NNSISRTGLADGVRKLTPNGLELLATVDVMRERAEYLCSLVISNKVENTSPCANMVSVLD 124
Query: 83 FLGSV 69
+LG +
Sbjct: 125 YLGKL 129
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 230 TTTRPFERPWC*WFATCRRPPFAFAPKGLPAVCC 331
TT P RP C C +PP PK PA C
Sbjct: 745 TTKHPRHRPGC-TCIVCIQPPSGKGPKHNPACTC 777
>05_07_0214 - 28451861-28453069
Length = 402
Score = 27.1 bits (57), Expect = 7.5
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Frame = -3
Query: 465 RHIITKY-QLDNEISLLIE-----LNHDCFN----K*YR*YGHWQQHVANTKKPPQQTAG 316
RH + + +LD+E+++++E L H F+ + + YG QH+A + P
Sbjct: 63 RHRLDRLARLDHELAIILEAIVPMLMHTPFHIVAGRELQRYGWSIQHLAASIFGPVHALH 122
Query: 315 KPFGANANGGRRHVANHQHHG 253
G RRH A HQHHG
Sbjct: 123 AAVGPVGRFLRRH-ARHQHHG 142
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 284 RPPFAFAPKGLPAVCCGGFFVFATCCCQ 367
RPP A+A LPA+ CG CCQ
Sbjct: 242 RPP-AYAASQLPALICGLSAQLPALCCQ 268
>12_01_0199 -
1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 268 VCNMSTAAICVCAEGFA 318
VC S A +CVCA G+A
Sbjct: 309 VCLYSPAPVCVCAPGYA 325
>08_02_0480 + 17632176-17632814,17633838-17633906
Length = 235
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 351 ANTKKPPQQTAGKPFGANANGG 286
++T PP+Q KP+G +GG
Sbjct: 45 SSTSSPPEQLPAKPYGHKDSGG 66
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 444 QLDNEISLLIELNHDCFNK*YR*YGHWQQHVANTK 340
Q + E+SL ++ FN + G WQ+ ANTK
Sbjct: 92 QFNQELSLSGKIPSGLFNTMFEFTGCWQKDAANTK 126
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 312 PFGANANGGRRHVANHQHHG 253
PF A+G H +H HHG
Sbjct: 64 PFAPRAHGDHHHGHHHHHHG 83
>04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632
Length = 312
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 372 GHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLSNG 241
G W QH +N QQ A + F + + ++ + QH L+ G
Sbjct: 16 GSWWQHASNLASYEQQDAHEFFISILDHIHENIKDDQHKSLAQG 59
>03_05_0006 +
19527479-19528769,19529693-19530105,19530220-19530430,
19530531-19530768,19530847-19530997,19531240-19531542
Length = 868
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 268 VCNMSTAAICVCAEGF 315
VCN+ + +C CAEGF
Sbjct: 304 VCNVEQSPMCGCAEGF 319
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = -3
Query: 339 KPPQQTAGKPFGANANGGRRH--VANHQHHGL 250
+P A P A GG R + NH HHGL
Sbjct: 13 QPWSSAAPAPASAPGRGGARREILTNHHHHGL 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,949,007
Number of Sequences: 37544
Number of extensions: 232883
Number of successful extensions: 723
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -