Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16o15
         (467 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028587-1|AAH28587.1|  482|Homo sapiens NEK11 protein protein.        33   0.65 
AB071997-1|BAC06351.1|  470|Homo sapiens NIMA-related kinase 11S...    33   0.65 
AB071996-1|BAC06350.1|  645|Homo sapiens NIMA-related kinase 11L...    33   0.65 
DQ232881-1|ABB18374.1|  868|Homo sapiens LIN41 protein.                30   4.6  
AB020635-1|BAA74851.1|  619|Homo sapiens KIAA0828 protein protein.     29   8.0  

>BC028587-1|AAH28587.1|  482|Homo sapiens NEK11 protein protein.
          Length = 482

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -1

Query: 230 LINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQ 51
           L++D    + E LK+L   SVG  N  E +QAN     L++++   ++ F  S  +    
Sbjct: 45  LVSDKKAKRGEELKVLKEISVGELNPNETVQANLEAQLLSKLDHPAIVKFHASFVEQDNF 104

Query: 50  VIVTE 36
            I+TE
Sbjct: 105 CIITE 109


>AB071997-1|BAC06351.1|  470|Homo sapiens NIMA-related kinase 11S
           protein.
          Length = 470

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -1

Query: 230 LINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQ 51
           L++D    + E LK+L   SVG  N  E +QAN     L++++   ++ F  S  +    
Sbjct: 45  LVSDKKAKRGEELKVLKEISVGELNPNETVQANLEAQLLSKLDHPAIVKFHASFVEQDNF 104

Query: 50  VIVTE 36
            I+TE
Sbjct: 105 CIITE 109


>AB071996-1|BAC06350.1|  645|Homo sapiens NIMA-related kinase 11L
           protein.
          Length = 645

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -1

Query: 230 LINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQ 51
           L++D    + E LK+L   SVG  N  E +QAN     L++++   ++ F  S  +    
Sbjct: 45  LVSDKKAKRGEELKVLKEISVGELNPNETVQANLEAQLLSKLDHPAIVKFHASFVEQDNF 104

Query: 50  VIVTE 36
            I+TE
Sbjct: 105 CIITE 109


>DQ232881-1|ABB18374.1|  868|Homo sapiens LIN41 protein.
          Length = 868

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 354 VANTKKPPQQT--AGKPFGANANGGRRHVANHQH 259
           VA   +PP +   AG P GA  +   RH A+H H
Sbjct: 124 VATADEPPPKNGRAGAPAGAGGHSNHRHHAHHAH 157


>AB020635-1|BAA74851.1|  619|Homo sapiens KIAA0828 protein protein.
          Length = 619

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 287 AVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGA 162
           AV  +Q ++  A+     + + D++P++ ES   LST +VGA
Sbjct: 8   AVMSVQVVSAAAAAKVPEVELKDLSPSEAESQLGLSTAAVGA 49


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,611,912
Number of Sequences: 237096
Number of extensions: 1232554
Number of successful extensions: 3512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3504
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)