Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16o11
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321...    29   3.5  

>11_01_0417 -
           3214320-3214435,3214606-3214702,3214766-3214768,
           3215054-3215196,3215309-3215348,3215713-3215765,
           3215889-3215962,3216081-3216163,3216287-3216355,
           3216456-3216800
          Length = 340

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 807 VELGDINNVPPPTSRNEFKISKQLGYNFPA 718
           +++ DIN +P P +RN F I K  G  FPA
Sbjct: 309 IQVMDINEIPKPKNRNAF-IRKGNGGGFPA 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,955,904
Number of Sequences: 37544
Number of extensions: 442334
Number of successful extensions: 856
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)