Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16o11
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical pr...    29   4.1  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   4.1  
L14710-4|AAK84537.3|  526|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK1236.3b protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = -3

Query: 343 FHKACRRSSQTSKREALLLIYQRIGTATH*EYPDKISNYIITICISTHNNFNDIYAIERK 164
           FH  C  S Q  KR   L+   +   A   + P    N   T+  +     N+I  I+R+
Sbjct: 385 FHSICIASVQRIKRRNELVQQLQEINAQSCKSPTMTMNKKFTLAKAYQRVQNEIEKIDRE 444

Query: 163 SEFPTQY--LPPTQP 125
              P QY  +PP  P
Sbjct: 445 QILPQQYMNMPPMPP 459


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = -3

Query: 343 FHKACRRSSQTSKREALLLIYQRIGTATH*EYPDKISNYIITICISTHNNFNDIYAIERK 164
           FH  C  S Q  KR   L+   +   A   + P    N   T+  +     N+I  I+R+
Sbjct: 575 FHSICIASVQRIKRRNELVQQLQEINAQSCKSPTMTMNKKFTLAKAYQRVQNEIEKIDRE 634

Query: 163 SEFPTQY--LPPTQP 125
              P QY  +PP  P
Sbjct: 635 QILPQQYMNMPPMPP 649


>L14710-4|AAK84537.3|  526|Caenorhabditis elegans Hypothetical
           protein K02D10.1a protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -1

Query: 759 EFKISKQLGYNFPAEMDGVILPTRTRSQDAVPPVNTSRYNNPEAKSKAQ*PRFSFVFIVL 580
           E+ ++ Q  Y FP  + GV++P    +  AV  V T R  +P+   K   P   F+    
Sbjct: 180 EYLVTNQ-DYTFPGPVPGVVIPGSGATSAAVTAV-TGR--DPKVFGKPHKPMADFLLRRA 235

Query: 579 HCAPWKT 559
           H  P +T
Sbjct: 236 HVDPKRT 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,127,696
Number of Sequences: 27780
Number of extensions: 401182
Number of successful extensions: 849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)