Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16o09
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 34 0.095
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 34 0.095
AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase... 32 0.51
AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase... 32 0.51
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 31 0.89
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 31 0.89
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 30 1.6
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 30 1.6
AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical ... 30 2.1
Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical pr... 29 2.7
U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alp... 29 2.7
Z83244-7|CAB05829.1| 318|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali... 29 3.6
AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b p... 29 4.7
AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein ... 29 4.7
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 28 6.3
U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain (p... 28 6.3
U21323-12|AAA62554.2| 354|Caenorhabditis elegans Hypothetical p... 28 6.3
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 28 6.3
Z81046-2|CAB02824.1| 295|Caenorhabditis elegans Hypothetical pr... 28 8.3
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 28 8.3
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 28 8.3
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 34.3 bits (75), Expect = 0.095
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Frame = -1
Query: 573 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGIRFEQFELR-----LNELDA 409
EGE +L D+IE + VKKL +E V +T V +R Q E++ LN+ +
Sbjct: 910 EGEAKELTDRIEGLEAEVKKLTAANETKAVKADTDARKV-VRELQKEVKQLYNELNDKNQ 968
Query: 408 KLNMLQ-SAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFS 289
+ +M+Q +LKT+ T ++NG + + + + + FS
Sbjct: 969 QFDMVQEELTRLKTSKET-AENGQLQVQKQMDEEDRRSEFS 1008
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 34.3 bits (75), Expect = 0.095
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Frame = -1
Query: 573 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGIRFEQFELR-----LNELDA 409
EGE +L D+IE + VKKL +E V +T V +R Q E++ LN+ +
Sbjct: 910 EGEAKELTDRIEGLEAEVKKLTAANETKAVKADTDARKV-VRELQKEVKQLYNELNDKNQ 968
Query: 408 KLNMLQ-SAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFS 289
+ +M+Q +LKT+ T ++NG + + + + + FS
Sbjct: 969 QFDMVQEELTRLKTSKET-AENGQLQVQKQMDEEDRRSEFS 1008
>AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase c
like protein 1,isoform a protein.
Length = 1075
Score = 31.9 bits (69), Expect = 0.51
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = -1
Query: 642 GLLKILMRLNFDNKSNALLH-LQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFK 466
G L ++ +F+ N + H + T + D L KIE ++ + + + K + K
Sbjct: 942 GTLPDQLQRSFNKLKNLIAHCVTTLSQSDQLLSKIEDSIRRISECHEELSK-LCAEAGLK 1000
Query: 465 NDVGIRF-EQFELRLNELDAKLNMLQSAEKLKTAIVTE 355
R E F L L A+LN++ +++ +VT+
Sbjct: 1001 GQKATRAAENFTWNLRLLKAQLNLMNKSQEEAQDVVTQ 1038
>AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase c
like protein 1,isoform b protein.
Length = 1068
Score = 31.9 bits (69), Expect = 0.51
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = -1
Query: 642 GLLKILMRLNFDNKSNALLH-LQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFK 466
G L ++ +F+ N + H + T + D L KIE ++ + + + K + K
Sbjct: 935 GTLPDQLQRSFNKLKNLIAHCVTTLSQSDQLLSKIEDSIRRISECHEELSK-LCAEAGLK 993
Query: 465 NDVGIRF-EQFELRLNELDAKLNMLQSAEKLKTAIVTE 355
R E F L L A+LN++ +++ +VT+
Sbjct: 994 GQKATRAAENFTWNLRLLKAQLNLMNKSQEEAQDVVTQ 1031
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 31.1 bits (67), Expect = 0.89
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = -1
Query: 312 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEK 136
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+K
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 135 LYDKHYKIRKIAKRVI 88
L + + + K++K +I
Sbjct: 686 LTYETF-MEKMSKYLI 700
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 31.1 bits (67), Expect = 0.89
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = -1
Query: 312 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEK 136
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+K
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 135 LYDKHYKIRKIAKRVI 88
L + + + K++K +I
Sbjct: 686 LTYETF-MEKMSKYLI 700
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 552 ANHHARLQFEGAATRCFCCQNLTASKFSTTPAWSRTMR 665
A H Q AT+CF N+ T PAW +R
Sbjct: 263 AQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIR 300
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 552 ANHHARLQFEGAATRCFCCQNLTASKFSTTPAWSRTMR 665
A H Q AT+CF N+ T PAW +R
Sbjct: 408 AQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIR 445
>AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical
protein Y51A2D.12 protein.
Length = 334
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 1 ILITIIHVFYFTILLGITLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTL 153
I +T ++ F +L GI L+N + V T + F +F+++ F+ +L
Sbjct: 190 IFLTCFNIV-FNVLAGIRLYNMKKKGVKVPETSLFSMAFTVFVIDLFLTSL 239
>Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical
protein B0365.3 protein.
Length = 996
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 314 LVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLMPTSFLNVSWVTIN 493
+V +G VP L V A F F D S L+ S R+ +C+N P N+++ + N
Sbjct: 168 IVEVKGGDRVPADLRVVSA-FGFKVDNSSLTGESEPQSRSPDCTNENPLETRNIAFFSTN 226
>U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alpha
subunit protein.
Length = 996
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 314 LVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLMPTSFLNVSWVTIN 493
+V +G VP L V A F F D S L+ S R+ +C+N P N+++ + N
Sbjct: 168 IVEVKGGDRVPADLRVVSA-FGFKVDNSSLTGESEPQSRSPDCTNENPLETRNIAFFSTN 226
>Z83244-7|CAB05829.1| 318|Caenorhabditis elegans Hypothetical
protein W06F12.3 protein.
Length = 318
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -1
Query: 741 DSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGER 562
D DQVYH +++ +S++ +G F T L+++ R N N ++ L++ R
Sbjct: 246 DQDQVYHAKQLLLRNFQSRK----MGQNFGTFPRALELIKRTETPNYENFIVILKSCSSR 301
>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
pathway homologprotein 1 protein.
Length = 1451
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 291 SERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVL 190
S++ D +K+A+ +G+E ++R+ EDD E L
Sbjct: 182 SQKAKDEMKMAYQVGREEALQQRRNDLEDDEENL 215
>AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b
protein protein.
Length = 157
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 245 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 388
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein
protein.
Length = 703
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 245 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 388
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 546 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGIRF 445
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 546 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGIRF 445
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 8 protein.
Length = 813
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 280 DAFRKYGQMLVFGNVARKRHRAIFAFRYDGGFQFFGRLQHVKFGVEFVQTQFKLLK 447
D F + + F + A +R R+ + F GGF F + K+ + + Q QFK+L+
Sbjct: 83 DRFGTFDDVKQFEDNA-ERARSFYGFGGFGGFGFDESVFEYKYRMSYQQYQFKILE 137
>U21323-12|AAA62554.2| 354|Caenorhabditis elegans Hypothetical
protein C45G9.11 protein.
Length = 354
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 1 ILITIIHVFYFTILLGITLFNYIMSTIHVDYTFSYFSNFVMFIVEFF 141
I + + +F I L N+ + +H+ Y F FS F+ F F
Sbjct: 251 IAVYDVALFVIAIATARALVNFDKAVLHIHYIFCIFSFFINFFFLIF 297
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 546 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGIRF 445
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>Z81046-2|CAB02824.1| 295|Caenorhabditis elegans Hypothetical
protein C37E2.3 protein.
Length = 295
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Frame = +1
Query: 4 LITIIHV-FYFTILLGITLFNY-----IMSTIHVD-YTFSYFSNFVMFIV 132
+I++++V FYF I+LG+ +N ++ + +D + SY + V+F +
Sbjct: 223 MISVVYVTFYFIIVLGVKYYNRMWVYPVLQSFSIDLFVISYILSVVIFFI 272
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +3
Query: 540 QFCRANHHARLQFEGAATRCFCCQNLTASKFSTTPAWS 653
++C N H Q + C C N S FS P S
Sbjct: 1265 EYCFRNSHCESQRQCLKNVCKCASNFVQSSFSCVPRMS 1302
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 1, isoform a
protein.
Length = 1281
Score = 27.9 bits (59), Expect = 8.3
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Frame = -1
Query: 579 QTEGERDDLRDKIESVLKHVK----------KLNTNSEKFMVTHETFKNDVGIRFEQFEL 430
Q +R+ L +KI + KH + K+N N ++ + KN ++ E+ +
Sbjct: 689 QLREKRNQLNEKIADLQKHRRRELEVESVRSKINGNEQRLAMMKRDLKNMREMQLERLQN 748
Query: 429 RLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLA--IFSERIDDRIKLAF 256
L + A++NML + S++ T TK +A IF++ R+ +A
Sbjct: 749 ELEGMTAEMNMLPPRISNCQEKLERSES---TLKSLQTKSNEVADRIFAD-FCTRVGIAS 804
Query: 255 VLGQERHFRKRKMRFEDDME 196
+ R + R+MR + +ME
Sbjct: 805 I----RDYENREMRIKQEME 820
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,569,500
Number of Sequences: 27780
Number of extensions: 377965
Number of successful extensions: 1368
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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