Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16o09
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   1.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.5  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.5  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/72 (20%), Positives = 30/72 (41%)
 Frame = -1

Query: 561 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGIRFEQFELRLNELDAKLNMLQSAE 382
           DD+   +E   + + +     E  +       ND      +F++ LN+ D  +++  S  
Sbjct: 36  DDIDSLLEDESERMLRKRGCIEACLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIR 95

Query: 381 KLKTAIVTESKN 346
           K+    V  +KN
Sbjct: 96  KIIRQCVDNAKN 107


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 87  DVDCTHNVVKEGYTKKYC 34
           D+DC + VV+ G   ++C
Sbjct: 481 DIDCINRVVQRGTKMQFC 498


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 732 QVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHL 580
           Q YH+  + F KQK  ++   L       +  L  LM   F NKS  ++ +
Sbjct: 9   QHYHITPV-FTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEI 58


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/54 (20%), Positives = 25/54 (46%)
 Frame = +2

Query: 251 KTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLA 412
           K   + +RSS      A+C    ++   +++ F+      V NFS   +++ ++
Sbjct: 256 KMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNLVKIS 309


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/54 (20%), Positives = 25/54 (46%)
 Frame = +2

Query: 251 KTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLA 412
           K   + +RSS      A+C    ++   +++ F+      V NFS   +++ ++
Sbjct: 6   KMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNLVKIS 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,715
Number of Sequences: 438
Number of extensions: 4592
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)