Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16o08
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)       133   8e-32
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)        93   1e-19
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        90   7e-19
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        90   7e-19
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         90   7e-19
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         90   7e-19
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)        88   4e-18
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)        87   6e-18
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.016
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_48444| Best HMM Match : Death (HMM E-Value=2.1e-16)                 27   9.7  

>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
          Length = 154

 Score =  133 bits (321), Expect = 8e-32
 Identities = 62/100 (62%), Positives = 71/100 (71%)
 Frame = -1

Query: 430 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 251
           MK+ LC YSGYKIYPGHGK  V+ DGK F FLN +CE A LMRRNPR+VTWTVLYRRK K
Sbjct: 1   MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60

Query: 250 KGQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 131
           KG +EE              ++ GASL +I+AKRN KPEV
Sbjct: 61  KGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 100


>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
          Length = 139

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 44/78 (56%), Positives = 52/78 (66%)
 Frame = -1

Query: 364 KVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAI 185
           K  GK F +LN +CE A LMRRNPR+VTWTVLYRRK KKG +EE              ++
Sbjct: 38  KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 97

Query: 184 VGASLSDIMAKRNMKPEV 131
            GASL +I+AKRN KPEV
Sbjct: 98  QGASLDNILAKRNQKPEV 115


>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 113

 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 43/74 (58%), Positives = 50/74 (67%)
 Frame = -1

Query: 352 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 173
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE              ++ GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 172 LSDIMAKRNMKPEV 131
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 43/74 (58%), Positives = 50/74 (67%)
 Frame = -1

Query: 352 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 173
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE              ++ GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 172 LSDIMAKRNMKPEV 131
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 43/74 (58%), Positives = 50/74 (67%)
 Frame = -1

Query: 352 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 173
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE              ++ GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 172 LSDIMAKRNMKPEV 131
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 43/74 (58%), Positives = 50/74 (67%)
 Frame = -1

Query: 352 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 173
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE              ++ GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 172 LSDIMAKRNMKPEV 131
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
          Length = 104

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 42/74 (56%), Positives = 49/74 (66%)
 Frame = -1

Query: 352 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 173
           K F FLN +CE A LMRRNPR+VTWTVLYRR  KKG +EE              ++ GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 172 LSDIMAKRNMKPEV 131
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
          Length = 90

 Score = 87.0 bits (206), Expect = 6e-18
 Identities = 42/74 (56%), Positives = 49/74 (66%)
 Frame = -1

Query: 352 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXAIVGAS 173
           K F FLN +CE A LMRRNPR+VTWTVLYR K KKG +EE              ++ GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 172 LSDIMAKRNMKPEV 131
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 253 KKGQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 131
           KKG +EE              ++ GASL +I+AKRN KPEV
Sbjct: 2   KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 42


>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 307 MRRNPRKVTWTVLYRR 260
           M+RNPRK+ WT  +R+
Sbjct: 1   MKRNPRKMKWTKAFRK 16


>SB_48444| Best HMM Match : Death (HMM E-Value=2.1e-16)
          Length = 486

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 349 TFTFLNSKCEAAHLMRRNPRKVT 281
           TF+    KCE ++ + +NPRK+T
Sbjct: 5   TFSSRKKKCEKSYRVLQNPRKMT 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,973,344
Number of Sequences: 59808
Number of extensions: 232290
Number of successful extensions: 470
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)