Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16o05
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical ...    34   0.12 
U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AF039051-6|AAB94266.2|  448|Caenorhabditis elegans Hypothetical ...    29   4.6  
AF039051-4|AAB94264.1|  539|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical
           protein K06H6.4 protein.
          Length = 467

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 32/108 (29%), Positives = 51/108 (47%)
 Frame = -1

Query: 590 KRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTDQF 411
           +R+ +  E   T++ YLD I +A +  L  RVK  +++DNN       TP  Y    D+ 
Sbjct: 276 ERLEIRNEQFKTVVDYLDSIHNASIANLRFRVKW-VIKDNN-------TPERYE--NDKQ 325

Query: 410 ICNYLGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLT 267
           I + +    +  T  L     F +  C       PE+V I+T++ PLT
Sbjct: 326 ITDEMLFHKYQNTSQLGNF--FDQPKCII----RPENVAIMTIHGPLT 367


>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 154 FICTVDGVTQRSI*RSCSINFLANLYHKNCLDKKFSNDVNGRFNVTMRTSSGMHLLKNAQ 333
           ++  ++ +++ SI RS   NFL  + H+  L  +    +   FN   R +   HL +  Q
Sbjct: 31  YVKNIENISKESINRSVLNNFLETVVHQKSLPFEILRTMTDHFNYGPRLNFN-HLHQQQQ 89

Query: 334 L---ALPNESKGTKYG 372
           L    +P+E  G K G
Sbjct: 90  LHSTIIPSEYLGDKSG 105


>AF039051-6|AAB94266.2|  448|Caenorhabditis elegans Hypothetical
           protein C14C6.8 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 590 KRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDY 456
           +R+ +  E   T++ YLD I +A V  L  RVK  +  +N    Y
Sbjct: 257 ERLEIRNEQFKTVVDYLDSIHNASVANLHFRVKWVMKHNNTPARY 301


>AF039051-4|AAB94264.1|  539|Caenorhabditis elegans Hypothetical
           protein C14C6.6 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 590 KRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDY 456
           +RI +  E   T+  YLD I ++ +  L  RVK  L  +N    Y
Sbjct: 328 ERIEIRSENFKTVTSYLDSIHNSSISNLHFRVKWVLKHNNTPATY 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,183,197
Number of Sequences: 27780
Number of extensions: 336265
Number of successful extensions: 943
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)