Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16o02
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    94   4e-21
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    27   0.84 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   1.5  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   1.5  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   1.9  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   3.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   4.5  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    24   4.5  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    23   7.9  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 94.3 bits (224), Expect = 4e-21
 Identities = 46/79 (58%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
 Frame = -3

Query: 262 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 86
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 85  RRMGESDDCIVRLTKKDGI 29
           R  GESDDCI RLT +DG+
Sbjct: 60  RSKGESDDCINRLTTQDGL 78


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 132 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 275
           P+     A+T  TE W++A+    +A  F     S       C  Y+R
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYLR 529


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = +3

Query: 111 LDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 275
           L VS+      S   ++     W+  W    L E F+   + TN+     + Y+R
Sbjct: 170 LAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLCYIR 224


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 162 SCTEAWSLAWMRRLLAEHFLGQYKST 239
           S T+A SL W  +   +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 180 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 272
           SL  M  +L EH+ G++    SP   CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = +2

Query: 86  DSPT--DNIHFRCVSSTTCGGVYVSN 157
           D PT  D I   C     CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 221 RAVQVNEFTGVVLHFICTST 280
           RAV + + TG VLHF  T T
Sbjct: 808 RAVPLRDCTGSVLHFFGTMT 827


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 24  PGIPSFFVNLTMQSSDSPILRIAPQT 101
           PGIP+ F   T    D P     PQT
Sbjct: 411 PGIPNHFAKTTSSVFDEPPATRMPQT 436


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 12  NSF*PGIPSFFVNLTMQSSDSPILRIAPQ 98
           NS  PG  +   NLT+QS ++P  R APQ
Sbjct: 131 NSQSPGTDTSDANLTIQSIEAP--RRAPQ 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,289,453
Number of Sequences: 5004
Number of extensions: 21999
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)