Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16n20
(566 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 216 4e-56
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 216 4e-56
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 216 4e-56
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 216 4e-56
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 214 2e-55
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 187 2e-47
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 36 0.13
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 36 0.13
Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7) prot... 30 4.9
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 30 4.9
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 30 4.9
BC117263-1|AAI17264.1| 1069|Homo sapiens SLC24A1 protein protein. 30 6.5
AF062922-1|AAC77912.1| 1099|Homo sapiens retinal rod Na-Ca+K exc... 30 6.5
AF062921-1|AAC16732.1| 1099|Homo sapiens retinal rod Na-Ca+K exc... 30 6.5
AF026132-1|AAB97832.1| 1081|Homo sapiens retinal rod Na+/Ca+, K+... 30 6.5
AB014602-1|BAA31677.2| 988|Homo sapiens KIAA0702 protein protein. 30 6.5
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 216 bits (528), Expect = 4e-56
Identities = 109/181 (60%), Positives = 129/181 (71%), Gaps = 2/181 (1%)
Frame = -1
Query: 542 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 363
MG+DI H DRKVRR E KSQDI RTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 362 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 183
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 182 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 9
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 180
Query: 8 R 6
R
Sbjct: 181 R 181
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 216 bits (528), Expect = 4e-56
Identities = 109/181 (60%), Positives = 129/181 (71%), Gaps = 2/181 (1%)
Frame = -1
Query: 542 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 363
MG+DI H DRKVRR E KSQDI RTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 362 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 183
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 182 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 9
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 180
Query: 8 R 6
R
Sbjct: 181 R 181
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 216 bits (528), Expect = 4e-56
Identities = 109/181 (60%), Positives = 129/181 (71%), Gaps = 2/181 (1%)
Frame = -1
Query: 542 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 363
MG+DI H DRKVRR E KSQDI RTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 362 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 183
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 182 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 9
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 180
Query: 8 R 6
R
Sbjct: 181 R 181
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 216 bits (528), Expect = 4e-56
Identities = 109/181 (60%), Positives = 129/181 (71%), Gaps = 2/181 (1%)
Frame = -1
Query: 542 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 363
MG+DI H DRKVRR E KSQDI RTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 362 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 183
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 182 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 9
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 180
Query: 8 R 6
R
Sbjct: 181 R 181
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 214 bits (523), Expect = 2e-55
Identities = 108/181 (59%), Positives = 128/181 (70%), Gaps = 2/181 (1%)
Frame = -1
Query: 542 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 363
MG+DI H DRKVRR E KSQDI RTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 362 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 183
+ +SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LCLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 182 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 9
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR 180
Query: 8 R 6
R
Sbjct: 181 R 181
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 187 bits (456), Expect = 2e-47
Identities = 91/143 (63%), Positives = 110/143 (76%), Gaps = 2/143 (1%)
Frame = -1
Query: 428 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 249
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75
Query: 248 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGA 69
V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG
Sbjct: 76 KVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 135
Query: 68 PRSHTKPYVRTKGH--EKARPSR 6
P SHTKPYVR+KG E+AR R
Sbjct: 136 PHSHTKPYVRSKGRKFERARGRR 158
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 35.5 bits (78), Expect = 0.13
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Frame = -3
Query: 306 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF-----*SAGSSCSDWQ 142
CR SG S R CS +S T CW + F S+G+S +
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWSSGTSSTPCS 89
Query: 141 EDSTGTRSAKC----S*GSASLWPCSRSTALSH*TLCSHQGT 28
S+GT S C S S++ W C S S +C GT
Sbjct: 90 CRSSGTSSTSCSCWSSGTSSTSWSCKSSGTSSTCYMCLSSGT 131
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 35.5 bits (78), Expect = 0.13
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Frame = -3
Query: 306 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF-----*SAGSSCSDWQ 142
CR SG S R CS +S T CW + F S+G+S +
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWSSGTSSTPCS 89
Query: 141 EDSTGTRSAKC----S*GSASLWPCSRSTALSH*TLCSHQGT 28
S+GT S C S S++ W C S S +C GT
Sbjct: 90 CRSSGTSSTSCSCWSSGTSSTSWSCKSSGTSSTCYMCLSSGT 131
>Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7)
protein.
Length = 180
Score = 30.3 bits (65), Expect = 4.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 216 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 338
+F N+KSS +R + C H Q SWLL+V
Sbjct: 138 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 178
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 30.3 bits (65), Expect = 4.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 216 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 338
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 30.3 bits (65), Expect = 4.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 216 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 338
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>BC117263-1|AAI17264.1| 1069|Homo sapiens SLC24A1 protein protein.
Length = 1069
Score = 29.9 bits (64), Expect = 6.5
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -1
Query: 260 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 81
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 80 AP-GAPRSHTKPYVRTKGHEKARPSRR 3
P G +S++ VR K K PS R
Sbjct: 169 TPRGEMKSYSPTQVREK--VKYTPSPR 193
>AF062922-1|AAC77912.1| 1099|Homo sapiens retinal rod Na-Ca+K
exchanger protein.
Length = 1099
Score = 29.9 bits (64), Expect = 6.5
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -1
Query: 260 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 81
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 80 AP-GAPRSHTKPYVRTKGHEKARPSRR 3
P G +S++ VR K K PS R
Sbjct: 169 TPRGEMKSYSPTQVREK--VKYTPSPR 193
>AF062921-1|AAC16732.1| 1099|Homo sapiens retinal rod Na-Ca+K
exchanger splice variant protein.
Length = 1099
Score = 29.9 bits (64), Expect = 6.5
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -1
Query: 260 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 81
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 80 AP-GAPRSHTKPYVRTKGHEKARPSRR 3
P G +S++ VR K K PS R
Sbjct: 169 TPRGEMKSYSPTQVREK--VKYTPSPR 193
>AF026132-1|AAB97832.1| 1081|Homo sapiens retinal rod Na+/Ca+, K+
exchanger protein.
Length = 1081
Score = 29.9 bits (64), Expect = 6.5
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -1
Query: 260 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 81
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 80 AP-GAPRSHTKPYVRTKGHEKARPSRR 3
P G +S++ VR K K PS R
Sbjct: 169 TPRGEMKSYSPTQVREK--VKYTPSPR 193
>AB014602-1|BAA31677.2| 988|Homo sapiens KIAA0702 protein protein.
Length = 988
Score = 29.9 bits (64), Expect = 6.5
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -1
Query: 260 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 81
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 117 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 171
Query: 80 AP-GAPRSHTKPYVRTKGHEKARPSRR 3
P G +S++ VR K K PS R
Sbjct: 172 TPRGEMKSYSPTQVREK--VKYTPSPR 196
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,208,489
Number of Sequences: 237096
Number of extensions: 2140116
Number of successful extensions: 5125
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5123
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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