Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16n16
(451 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37976-1|CAA86030.1| 1821|Homo sapiens LTBP-2 precursor protein. 32 0.79
S82451-1|AAB37459.1| 1821|Homo sapiens latent transforming growt... 32 0.79
BC078659-1|AAH78659.1| 1821|Homo sapiens latent transforming gro... 32 0.79
AB209865-1|BAD93102.1| 1700|Homo sapiens latent transforming gro... 32 0.79
AL589653-1|CAI40809.1| 1560|Homo sapiens proprotein convertase s... 31 1.4
AL391868-1|CAI40675.1| 1560|Homo sapiens proprotein convertase s... 31 1.4
AL353607-3|CAI41234.1| 1560|Homo sapiens proprotein convertase s... 31 1.4
L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein r... 30 3.2
BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein... 30 3.2
BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein... 30 3.2
AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein... 30 3.2
AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein... 30 3.2
AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein... 30 3.2
AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein... 30 3.2
M34057-1|AAA61160.1| 1394|Homo sapiens TGFB1 protein. 29 7.3
BC130289-1|AAI30290.1| 1395|Homo sapiens latent transforming gro... 29 7.3
BC008761-1|AAH08761.2| 743|Homo sapiens LTBP3 protein protein. 29 7.3
AL117551-1|CAB55988.1| 511|Homo sapiens hypothetical protein pr... 29 7.3
AK024477-1|BAB15767.1| 1382|Homo sapiens FLJ00070 protein protein. 29 7.3
AF489528-1|AAM03124.1| 1394|Homo sapiens transforming growth fac... 29 7.3
AF135960-1|AAF62352.3| 1256|Homo sapiens latent transforming gro... 29 7.3
AC019127-1|AAY24260.1| 697|Homo sapiens unknown protein. 29 7.3
AB208801-1|BAD92038.1| 1348|Homo sapiens latent transforming gro... 29 7.3
AY165865-1|AAO18147.1| 2809|Homo sapiens fibrillin-3 short form ... 29 9.7
AY165864-1|AAO18146.1| 2809|Homo sapiens fibrillin-3 short form ... 29 9.7
AY165863-1|AAO18145.1| 2809|Homo sapiens fibrillin-3 short form ... 29 9.7
AB177800-1|BAD16736.1| 2809|Homo sapiens fibrillin 3 protein. 29 9.7
AB177799-1|BAD16735.1| 2809|Homo sapiens fibrillin 3 protein. 29 9.7
AB177798-1|BAD16734.1| 2809|Homo sapiens fibrillin 3 protein. 29 9.7
AB177797-1|BAD16733.1| 2809|Homo sapiens fibrillin 3 protein. 29 9.7
AB053450-1|BAB47408.2| 2816|Homo sapiens fibrillin3 protein. 29 9.7
>Z37976-1|CAA86030.1| 1821|Homo sapiens LTBP-2 precursor protein.
Length = 1821
Score = 32.3 bits (70), Expect = 0.79
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 127 TKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISD 14
T C + C + LC +GFE P+ DCV +++
Sbjct: 1311 TMCGSHGFCDNTDGSFRCLCDQGFEISPSGWDCVDVNE 1348
>S82451-1|AAB37459.1| 1821|Homo sapiens latent transforming growth
factor-beta-binding protein-2 protein.
Length = 1821
Score = 32.3 bits (70), Expect = 0.79
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 127 TKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISD 14
T C + C + LC +GFE P+ DCV +++
Sbjct: 1311 TMCGSHGFCDNTDGSFRCLCDQGFEISPSGWDCVDVNE 1348
>BC078659-1|AAH78659.1| 1821|Homo sapiens latent transforming growth
factor beta binding protein 2 protein.
Length = 1821
Score = 32.3 bits (70), Expect = 0.79
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 127 TKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISD 14
T C + C + LC +GFE P+ DCV +++
Sbjct: 1311 TMCGSHGFCDNTDGSFRCLCDQGFEISPSGWDCVDVNE 1348
>AB209865-1|BAD93102.1| 1700|Homo sapiens latent transforming growth
factor beta binding protein 2 variant protein.
Length = 1700
Score = 32.3 bits (70), Expect = 0.79
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 127 TKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISD 14
T C + C + LC +GFE P+ DCV +++
Sbjct: 1190 TMCGSHGFCDNTDGSFRCLCDQGFEISPSGWDCVDVNE 1227
>AL589653-1|CAI40809.1| 1560|Homo sapiens proprotein convertase
subtilisin/kexin type 5 protein.
Length = 1560
Score = 31.5 bits (68), Expect = 1.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 127 TKCNAFYMCVGINHRLELL-CSEGFEFDPNVKDCVPISDYGC 5
T+C Y NH + L C +G DP+ ++CVP + GC
Sbjct: 675 TRCMKGYFIAPTNHTCQKLECGQGEVQDPDYEECVPCEE-GC 715
>AL391868-1|CAI40675.1| 1560|Homo sapiens proprotein convertase
subtilisin/kexin type 5 protein.
Length = 1560
Score = 31.5 bits (68), Expect = 1.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 127 TKCNAFYMCVGINHRLELL-CSEGFEFDPNVKDCVPISDYGC 5
T+C Y NH + L C +G DP+ ++CVP + GC
Sbjct: 675 TRCMKGYFIAPTNHTCQKLECGQGEVQDPDYEECVPCEE-GC 715
>AL353607-3|CAI41234.1| 1560|Homo sapiens proprotein convertase
subtilisin/kexin type 5 protein.
Length = 1560
Score = 31.5 bits (68), Expect = 1.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 127 TKCNAFYMCVGINHRLELL-CSEGFEFDPNVKDCVPISDYGC 5
T+C Y NH + L C +G DP+ ++CVP + GC
Sbjct: 675 TRCMKGYFIAPTNHTCQKLECGQGEVQDPDYEECVPCEE-GC 715
>L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 30.3 bits (65), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 130 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 29
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 361 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 392
>BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 30.3 bits (65), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 130 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 29
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 361 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 392
>BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 30.3 bits (65), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 130 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 29
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 361 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 392
>AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 30.3 bits (65), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 130 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 29
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 361 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 392
>AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 30.3 bits (65), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 130 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 29
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 361 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 392
>AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein
receptor protein.
Length = 837
Score = 30.3 bits (65), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 130 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 29
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 338 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 369
>AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein
receptor precursor variant protein.
Length = 870
Score = 30.3 bits (65), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 130 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 29
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 373 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 404
>M34057-1|AAA61160.1| 1394|Homo sapiens TGFB1 protein.
Length = 1394
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 133 HPTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISDYGCT 2
+P C A + C+ + R +C EG+ F + CV I + CT
Sbjct: 553 NPDICGAGH-CINLPVRYTCICYEGYRFSEQQRKCVDIDE--CT 593
>BC130289-1|AAI30290.1| 1395|Homo sapiens latent transforming growth
factor beta binding protein 1 protein.
Length = 1395
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 133 HPTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISDYGCT 2
+P C A + C+ + R +C EG+ F + CV I + CT
Sbjct: 554 NPDICGAGH-CINLPVRYTCICYEGYRFSEQQRKCVDIDE--CT 594
>BC008761-1|AAH08761.2| 743|Homo sapiens LTBP3 protein protein.
Length = 743
Score = 29.1 bits (62), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCVPISD 14
CV E C +GF +D N+ +CV + +
Sbjct: 497 CVNTQPGYECYCKQGFYYDGNLLECVDVDE 526
>AL117551-1|CAB55988.1| 511|Homo sapiens hypothetical protein
protein.
Length = 511
Score = 29.1 bits (62), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCVPISD 14
CV E C +GF +D N+ +CV + +
Sbjct: 218 CVNTQPGYECYCKQGFYYDGNLLECVDVDE 247
>AK024477-1|BAB15767.1| 1382|Homo sapiens FLJ00070 protein protein.
Length = 1382
Score = 29.1 bits (62), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCVPISD 14
CV E C +GF +D N+ +CV + +
Sbjct: 1089 CVNTQPGYECYCKQGFYYDGNLLECVDVDE 1118
>AF489528-1|AAM03124.1| 1394|Homo sapiens transforming growth
factor-beta binding protein-1S protein.
Length = 1394
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 133 HPTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISDYGCT 2
+P C A + C+ + R +C EG+ F + CV I + CT
Sbjct: 553 NPDICGAGH-CINLPVRYTCICYEGYRFSEQQRKCVDIDE--CT 593
>AF135960-1|AAF62352.3| 1256|Homo sapiens latent transforming growth
factor beta binding protein 3 protein.
Length = 1256
Score = 29.1 bits (62), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCVPISD 14
CV E C +GF +D N+ +CV + +
Sbjct: 1010 CVNTQPGYECYCKQGFYYDGNLLECVDVDE 1039
>AC019127-1|AAY24260.1| 697|Homo sapiens unknown protein.
Length = 697
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 133 HPTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISDYGCT 2
+P C A + C+ + R +C EG+ F + CV I + CT
Sbjct: 7 NPDICGAGH-CINLPVRYTCICYEGYRFSEQQRKCVDIDE--CT 47
>AB208801-1|BAD92038.1| 1348|Homo sapiens latent transforming growth
factor beta binding protein 1 isoform LTBP-1S varian
protein.
Length = 1348
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 133 HPTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISDYGCT 2
+P C A + C+ + R +C EG+ F + CV I + CT
Sbjct: 507 NPDICGAGH-CINLPVRYTCICYEGYRFSEQQRKCVDIDE--CT 547
>AY165865-1|AAO18147.1| 2809|Homo sapiens fibrillin-3 short form
precursor transcript variant 3 protein.
Length = 2809
Score = 28.7 bits (61), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCV 26
CV + +C+ GFE P+ K+CV
Sbjct: 505 CVNTEGSFQCVCNAGFELSPDGKNCV 530
>AY165864-1|AAO18146.1| 2809|Homo sapiens fibrillin-3 short form
precursor transcript variant 2 protein.
Length = 2809
Score = 28.7 bits (61), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCV 26
CV + +C+ GFE P+ K+CV
Sbjct: 505 CVNTEGSFQCVCNAGFELSPDGKNCV 530
>AY165863-1|AAO18145.1| 2809|Homo sapiens fibrillin-3 short form
precursor transcript variant 1 protein.
Length = 2809
Score = 28.7 bits (61), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCV 26
CV + +C+ GFE P+ K+CV
Sbjct: 505 CVNTEGSFQCVCNAGFELSPDGKNCV 530
>AB177800-1|BAD16736.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 28.7 bits (61), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCV 26
CV + +C+ GFE P+ K+CV
Sbjct: 505 CVNTEGSFQCVCNAGFELSPDGKNCV 530
>AB177799-1|BAD16735.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 28.7 bits (61), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCV 26
CV + +C+ GFE P+ K+CV
Sbjct: 505 CVNTEGSFQCVCNAGFELSPDGKNCV 530
>AB177798-1|BAD16734.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 28.7 bits (61), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCV 26
CV + +C+ GFE P+ K+CV
Sbjct: 505 CVNTEGSFQCVCNAGFELSPDGKNCV 530
>AB177797-1|BAD16733.1| 2809|Homo sapiens fibrillin 3 protein.
Length = 2809
Score = 28.7 bits (61), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCV 26
CV + +C+ GFE P+ K+CV
Sbjct: 505 CVNTEGSFQCVCNAGFELSPDGKNCV 530
>AB053450-1|BAB47408.2| 2816|Homo sapiens fibrillin3 protein.
Length = 2816
Score = 28.7 bits (61), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 103 CVGINHRLELLCSEGFEFDPNVKDCV 26
CV + +C+ GFE P+ K+CV
Sbjct: 512 CVNTEGSFQCVCNAGFELSPDGKNCV 537
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,719,133
Number of Sequences: 237096
Number of extensions: 715707
Number of successful extensions: 1353
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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