Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16n12
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467     29   4.1  
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311...    29   5.4  
05_04_0145 - 18391112-18392461,18392545-18392637                       29   5.4  
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245...    28   7.1  
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965...    28   7.1  

>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
          Length = 976

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -1

Query: 265 PLTTVLNKNLSELINYVKANPKILAIYSTSSPQDKLNILNEIHF 134
           P    L K+++EL+   +A  +++ + S  +  D+LNI++ + F
Sbjct: 161 PRILALYKDITELVGIEEARDELIGMLSRPADDDQLNIVSVVGF 204


>12_02_1221 -
           27130321-27130491,27130616-27130664,27131120-27131188,
           27131845-27131939,27132032-27132121,27132885-27132968,
           27133122-27133211,27133310-27133624,27134184-27134399,
           27134736-27134774,27135337-27135408
          Length = 429

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 403 NITPGCAYTSQFGVLTCCPNGNIGFLANNSDGTV 302
           NI  G   T   G+  CCPN  +  ++N  + TV
Sbjct: 148 NINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTV 181


>05_04_0145 - 18391112-18392461,18392545-18392637
          Length = 480

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 487 TPPVKPDHHRAPST-ASSHTPDASVGLHINITPGCAYTSQFGVLTCCPNGNIGFLANNS 314
           +PP       AP+T A +++   +VG   + +     TS+F  + CC  GN     NN+
Sbjct: 50  SPPTPRRARHAPATTAVTYSVAFAVGSQQDFSGALDVTSEFVWVPCCATGNSSCGTNNN 108


>10_01_0232 +
           2456449-2456652,2456814-2456897,2459113-2459201,
           2459245-2459452,2459764-2459883,2460004-2460087,
           2460171-2460242,2460342-2460455,2460852-2460952,
           2461024-2461117,2461265-2461432,2461539-2461616,
           2461908-2461973,2462052-2462108,2462353-2462572,
           2462867-2463003,2465379-2465450,2465530-2465577,
           2465681-2465806,2465982-2466047,2466508-2466620,
           2467348-2467432,2467885-2467980,2468067-2468114,
           2468190-2468258,2468393-2468581
          Length = 935

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 244 KNLSELINYVKANPKILAIYSTSS 173
           +N+  LINYV  + ++ A+YST S
Sbjct: 314 RNMDRLINYVNKDGRVHALYSTPS 337


>01_06_0205 -
           27495030-27495128,27495397-27496265,27496352-27496511,
           27497136-27497208,27497311-27497430,27498454-27498618,
           27498695-27498785,27499381-27499465,27499555-27499740,
           27499843-27499899,27499998-27500282
          Length = 729

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 698 RCISQKCQVHHLRYCYRISRFDGHHSDDT 612
           + +   C  H  R CYRI   D  ++DDT
Sbjct: 689 KSLGSSCATHFHRLCYRIQDDDRGNADDT 717


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,459,968
Number of Sequences: 37544
Number of extensions: 498586
Number of successful extensions: 1293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)